17458 8P62 H v1-1
17458_8p62_H_v1-1
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RCSB PDB: 8P62
EMDB: 17458
Structure title S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method ELECTRON MICROSCOPY
Resolution 3.9 Å
Source organism Saccharomyces cerevisiae
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
2    ​Y​​G​​D​​L​​G​​N​​K​​L​​V​​L​12   ​E​​A​​K​​R​​T​​K​​Q​​L​​Y​​A​22   ​R​​S​​N​​Q​​D​​V​​N​​L​​P​​M​32   ​Y​​H​​E​​D​​I​​I​​R​​N​​I​​L​42   ​K​​E​​V​​S​​N​​L​​R​​K​​N​​T​52   ​E​​Y​​L​​K​​E​​Q​​Q​​Q​​L​​G​62   ​M​​L​​D​​D​​K​​V​​A​​K​​C​​Q​72   ​Y​​F​​V​​T​​L​​L​​C​​M​​E​​R​82   ​N​​K​​R​​C​​L​​L​​A​​Y​​Q​​R​92   ​L​​R​​T​​D​​I​​L​​D​​S​​M​​A​102  ​W​​N​​N​​N​​G​​L​​D​​L​​M​​S​112  ​S​​S​​Q​​Q​​D​​T​​N​​N​​L​​S​125  ​H​​Q​​E​​Q​​E​​Y​​L​​K​​E​​Y​135  ​C​​D​​L​​I​​T​​D​​L​​K​​S​​G​145  ​D​​L​​V​​D​​I​​D​​L​​S​​G​​S​155  ​L​​V​​P​​P​​S​​D​​V​​F​​I​​D​165  ​V​​R​​V​​L​​K​​D​​A​​G​​E​​I​175  ​Q​​T​​E​​Y​​G​​V​​F​​N​​L​​I​185  ​K​​D​​S​​Q​​F​​F​​V​​R​​Q​​S​195  ​D​​V​​E​​R​​L​​I​​Q​​Q​​G​​Y​205  ​L​​Q​​K​​I​
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DAQ Score Table

Score range in the table: -0.01 .. 1
-0.01
1
#
Residue identifier
Residue name
DAQscore[AA]
1
2
TYR
0.86
2
3
GLY
0.83
3
4
ASP
0.97
4
5
LEU
1.00
5
6
GLY
0.84
6
7
ASN
0.71
7
8
LYS
0.67
8
9
LEU
0.68
9
10
VAL
0.62
10
11
LEU
0.62
11
12
GLU
0.63
12
13
ALA
0.50
13
14
LYS
0.50
14
15
ARG
0.48
15
16
THR
0.39
16
17
LYS
0.42
17
18
GLN
0.38
18
19
LEU
0.35
19
20
TYR
0.27
20
21
ALA
0.30
21
22
ARG
0.22
22
23
SER
0.15
23
24
ASN
0.07
24
25
GLN
0.13
25
26
ASP
0.20
26
27
VAL
0.19
27
28
ASN
0.21
28
29
LEU
0.22
29
30
PRO
0.22
30
31
MET
0.26
31
32
TYR
0.38
32
33
HIS
0.38
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
2    ​Y​​G​​D​​L​​G​​N​​K​​L​​V​​L​12   ​E​​A​​K​​R​​T​​K​​Q​​L​​Y​​A​22   ​R​​S​​N​​Q​​D​​V​​N​​L​​P​​M​32   ​Y​​H​​E​​D​​I​​I​​R​​N​​I​​L​42   ​K​​E​​V​​S​​N​​L​​R​​K​​N​​T​52   ​E​​Y​​L​​K​​E​​Q​​Q​​Q​​L​​G​62   ​M​​L​​D​​D​​K​​V​​A​​K​​C​​Q​72   ​Y​​F​​V​​T​​L​​L​​C​​M​​E​​R​82   ​N​​K​​R​​C​​L​​L​​A​​Y​​Q​​R​92   ​L​​R​​T​​D​​I​​L​​D​​S​​M​​A​102  ​W​​N​​N​​N​​G​​L​​D​​L​​M​​S​112  ​S​​S​​Q​​Q​​D​​T​​N​​N​​L​​S​125  ​H​​Q​​E​​Q​​E​​Y​​L​​K​​E​​Y​135  ​C​​D​​L​​I​​T​​D​​L​​K​​S​​G​145  ​D​​L​​V​​D​​I​​D​​L​​S​​G​​S​155  ​L​​V​​P​​P​​S​​D​​V​​F​​I​​D​165  ​V​​R​​V​​L​​K​​D​​A​​G​​E​​I​175  ​Q​​T​​E​​Y​​G​​V​​F​​N​​L​​I​185  ​K​​D​​S​​Q​​F​​F​​V​​R​​Q​​S​195  ​D​​V​​E​​R​​L​​I​​Q​​Q​​G​​Y​205  ​L​​Q​​K​​I​
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DAQ Score Table

Score range in the table: 0.07 .. 0.80
0.07
0.80
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
TYR
0.49
2
3
GLY
0.43
3
4
ASP
0.49
4
5
LEU
0.56
5
6
GLY
0.54
6
7
ASN
0.56
7
8
LYS
0.52
8
9
LEU
0.52
9
10
VAL
0.54
10
11
LEU
0.57
11
12
GLU
0.62
12
13
ALA
0.61
13
14
LYS
0.62
14
15
ARG
0.66
15
16
THR
0.65
16
17
LYS
0.62
17
18
GLN
0.56
18
19
LEU
0.53
19
20
TYR
0.53
20
21
ALA
0.50
21
22
ARG
0.54
22
23
SER
0.53
23
24
ASN
0.49
24
25
GLN
0.46
25
26
ASP
0.44
26
27
VAL
0.39
27
28
ASN
0.31
28
29
LEU
0.25
29
30
PRO
0.27
30
31
MET
0.26
31
32
TYR
0.29
32
33
HIS
0.31
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Sequence of
2    ​Y​​G​​D​​L​​G​​N​​K​​L​​V​​L​12   ​E​​A​​K​​R​​T​​K​​Q​​L​​Y​​A​22   ​R​​S​​N​​Q​​D​​V​​N​​L​​P​​M​32   ​Y​​H​​E​​D​​I​​I​​R​​N​​I​​L​42   ​K​​E​​V​​S​​N​​L​​R​​K​​N​​T​52   ​E​​Y​​L​​K​​E​​Q​​Q​​Q​​L​​G​62   ​M​​L​​D​​D​​K​​V​​A​​K​​C​​Q​72   ​Y​​F​​V​​T​​L​​L​​C​​M​​E​​R​82   ​N​​K​​R​​C​​L​​L​​A​​Y​​Q​​R​92   ​L​​R​​T​​D​​I​​L​​D​​S​​M​​A​102  ​W​​N​​N​​N​​G​​L​​D​​L​​M​​S​112  ​S​​S​​Q​​Q​​D​​T​​N​​N​​L​​S​125  ​H​​Q​​E​​Q​​E​​Y​​L​​K​​E​​Y​135  ​C​​D​​L​​I​​T​​D​​L​​K​​S​​G​145  ​D​​L​​V​​D​​I​​D​​L​​S​​G​​S​155  ​L​​V​​P​​P​​S​​D​​V​​F​​I​​D​165  ​V​​R​​V​​L​​K​​D​​A​​G​​E​​I​175  ​Q​​T​​E​​Y​​G​​V​​F​​N​​L​​I​185  ​K​​D​​S​​Q​​F​​F​​V​​R​​Q​​S​195  ​D​​V​​E​​R​​L​​I​​Q​​Q​​G​​Y​205  ​L​​Q​​K​​I​
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DAQ Score Table

Score range in the table: 0.12 .. 1.32
0.12
1.32
#
Residue identifier
Residue name
DAQscore[SS]
1
2
TYR
0.33
2
3
GLY
0.35
3
4
ASP
0.37
4
5
LEU
0.37
5
6
GLY
0.37
6
7
ASN
0.37
7
8
LYS
0.37
8
9
LEU
0.36
9
10
VAL
0.35
10
11
LEU
0.34
11
12
GLU
0.34
12
13
ALA
0.34
13
14
LYS
0.35
14
15
ARG
0.36
15
16
THR
0.36
16
17
LYS
0.38
17
18
GLN
0.37
18
19
LEU
0.33
19
20
TYR
0.34
20
21
ALA
0.36
21
22
ARG
0.35
22
23
SER
0.36
23
24
ASN
0.36
24
25
GLN
0.36
25
26
ASP
0.36
26
27
VAL
0.37
27
28
ASN
0.38
28
29
LEU
0.40
29
30
PRO
0.43
30
31
MET
0.46
31
32
TYR
0.48
32
33
HIS
0.49
3D View
Download PDB file DAQ[Total]
Render Map
Sequence of
2    ​Y​​G​​D​​L​​G​​N​​K​​L​​V​​L​12   ​E​​A​​K​​R​​T​​K​​Q​​L​​Y​​A​22   ​R​​S​​N​​Q​​D​​V​​N​​L​​P​​M​32   ​Y​​H​​E​​D​​I​​I​​R​​N​​I​​L​42   ​K​​E​​V​​S​​N​​L​​R​​K​​N​​T​52   ​E​​Y​​L​​K​​E​​Q​​Q​​Q​​L​​G​62   ​M​​L​​D​​D​​K​​V​​A​​K​​C​​Q​72   ​Y​​F​​V​​T​​L​​L​​C​​M​​E​​R​82   ​N​​K​​R​​C​​L​​L​​A​​Y​​Q​​R​92   ​L​​R​​T​​D​​I​​L​​D​​S​​M​​A​102  ​W​​N​​N​​N​​G​​L​​D​​L​​M​​S​112  ​S​​S​​Q​​Q​​D​​T​​N​​N​​L​​S​125  ​H​​Q​​E​​Q​​E​​Y​​L​​K​​E​​Y​135  ​C​​D​​L​​I​​T​​D​​L​​K​​S​​G​145  ​D​​L​​V​​D​​I​​D​​L​​S​​G​​S​155  ​L​​V​​P​​P​​S​​D​​V​​F​​I​​D​165  ​V​​R​​V​​L​​K​​D​​A​​G​​E​​I​175  ​Q​​T​​E​​Y​​G​​V​​F​​N​​L​​I​185  ​K​​D​​S​​Q​​F​​F​​V​​R​​Q​​S​195  ​D​​V​​E​​R​​L​​I​​Q​​Q​​G​​Y​205  ​L​​Q​​K​​I​
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DAQ Score Table

Score range in the table: 0.43 .. 2.51
0.43
2.51
#
Residue identifier
Residue name
DAQscore[Total]
1
2
TYR
1.68
2
3
GLY
1.61
3
4
ASP
1.82
4
5
LEU
1.93
5
6
GLY
1.76
6
7
ASN
1.64
7
8
LYS
1.56
8
9
LEU
1.56
9
10
VAL
1.51
10
11
LEU
1.53
11
12
GLU
1.59
12
13
ALA
1.45
13
14
LYS
1.48
14
15
ARG
1.50
15
16
THR
1.41
16
17
LYS
1.42
17
18
GLN
1.31
18
19
LEU
1.22
19
20
TYR
1.15
20
21
ALA
1.15
21
22
ARG
1.11
22
23
SER
1.04
23
24
ASN
0.91
24
25
GLN
0.94
25
26
ASP
1.00
26
27
VAL
0.96
27
28
ASN
0.90
28
29
LEU
0.87
29
30
PRO
0.92
30
31
MET
0.98
31
32
TYR
1.15
32
33
HIS
1.18