12037 7B5L D v1-2
12037_7b5l_D_v1-2
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RCSB PDB: 7B5L
EMDB: 12037
Structure title Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1
Method ELECTRON MICROSCOPY
Resolution 3.8 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
Render Map
SequenceNo structure available
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DAQ Score Table

Score range in the table: 0.17 .. 1.01
0.17
1.01
#
Residue identifier
Residue name
DAQscore[AA]
1
1
MET
0.40
2
2
ALA
0.39
3
3
ALA
0.44
4
4
SER
0.44
5
5
ARG
0.47
6
6
ARG
0.47
7
7
LEU
0.49
8
8
MET
0.47
9
9
LYS
0.51
10
10
GLU
0.50
11
11
LEU
0.50
12
12
GLU
0.51
13
13
GLU
0.54
14
14
ILE
0.54
15
15
ARG
0.54
16
16
LYS
0.49
17
17
ALA
0.42
18
18
GLY
0.41
19
19
MET
0.41
20
20
LYS
0.45
21
21
ASN
0.45
22
22
PHE
0.42
23
23
ARG
0.42
24
24
ASN
0.35
25
25
ILE
0.37
26
26
GLN
0.43
27
27
VAL
0.43
28
28
ASP
0.47
29
29
GLU
0.46
30
30
ALA
0.50
31
31
ASN
0.52
32
32
LEU
0.50
3D View
Download PDB file DAQ[Cα]
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: 0.18 .. 0.74
0.18
0.74
#
Residue identifier
Residue name
DAQscore[ATOM]
1
1
MET
0.58
2
2
ALA
0.61
3
3
ALA
0.64
4
4
SER
0.62
5
5
ARG
0.62
6
6
ARG
0.61
7
7
LEU
0.57
8
8
MET
0.56
9
9
LYS
0.55
10
10
GLU
0.53
11
11
LEU
0.53
12
12
GLU
0.56
13
13
GLU
0.58
14
14
ILE
0.56
15
15
ARG
0.51
16
16
LYS
0.48
17
17
ALA
0.44
18
18
GLY
0.41
19
19
MET
0.42
20
20
LYS
0.42
21
21
ASN
0.39
22
22
PHE
0.36
23
23
ARG
0.38
24
24
ASN
0.37
25
25
ILE
0.39
26
26
GLN
0.42
27
27
VAL
0.37
28
28
ASP
0.39
29
29
GLU
0.42
30
30
ALA
0.42
31
31
ASN
0.42
32
32
LEU
0.41
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.07 .. 0.97
-0.07
0.97
#
Residue identifier
Residue name
DAQscore[SS]
1
1
MET
0.54
2
2
ALA
0.58
3
3
ALA
0.61
4
4
SER
0.64
5
5
ARG
0.66
6
6
ARG
0.67
7
7
LEU
0.64
8
8
MET
0.60
9
9
LYS
0.60
10
10
GLU
0.57
11
11
LEU
0.58
12
12
GLU
0.60
13
13
GLU
0.66
14
14
ILE
0.65
15
15
ARG
0.64
16
16
LYS
0.60
17
17
ALA
0.53
18
18
GLY
0.48
19
19
MET
0.42
20
20
LYS
0.39
21
21
ASN
0.35
22
22
PHE
0.28
23
23
ARG
0.22
24
24
ASN
0.18
25
25
ILE
0.22
26
26
GLN
0.30
27
27
VAL
0.39
28
28
ASP
0.47
29
29
GLU
0.56
30
30
ALA
0.64
31
31
ASN
0.66
32
32
LEU
0.62
3D View
Download PDB file DAQ[Total]
Render Map
Parsing response... [98017/98017]
SequenceNo structure available
colorbar

DAQ Score Table