20740 6UDK R v2-0
20740_6udk_R_v2-0
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RCSB PDB: 6UDK
EMDB: 20740
Structure title HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074
Method ELECTRON MICROSCOPY
Resolution 3.9 Å
Source organism Human immunodeficiency virus 1
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: 0.22 .. 1.33
0.22
1.33
#
Residue identifier
Residue name
DAQscore[AA]
1
31
ALA
1.26
2
32
GLU
1.26
3
33
ASN
1.17
4
34
LEU
1.16
5
35
TRP
1.14
6
36
VAL
1.14
7
37
THR
1.14
8
38
VAL
1.13
9
39
TYR
1.16
10
40
TYR
1.16
11
41
GLY
1.17
12
42
VAL
1.16
13
43
PRO
1.22
14
44
VAL
1.16
15
45
TRP
1.12
16
46
LYS
0.96
17
47
ASP
0.92
18
48
ALA
0.88
19
49
GLU
0.84
20
50
THR
0.77
21
51
THR
0.74
22
52
LEU
0.79
23
53
PHE
0.76
24
54
CYS
0.76
25
55
ALA
0.72
26
56
SER
0.68
27
57
ASP
0.61
28
66
HIS
0.33
29
67
ASN
0.45
30
68
VAL
0.42
31
69
TRP
0.42
32
70
ALA
0.42
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: -0.14 .. 1.26
-0.14
1.26
#
Residue identifier
Residue name
DAQscore[ATOM]
1
31
ALA
0.91
2
32
GLU
0.77
3
33
ASN
0.77
4
34
LEU
0.76
5
35
TRP
0.72
6
36
VAL
0.67
7
37
THR
0.71
8
38
VAL
0.74
9
39
TYR
0.76
10
40
TYR
0.81
11
41
GLY
0.89
12
42
VAL
0.88
13
43
PRO
0.88
14
44
VAL
0.86
15
45
TRP
0.83
16
46
LYS
0.63
17
47
ASP
0.56
18
48
ALA
0.54
19
49
GLU
0.51
20
50
THR
0.52
21
51
THR
0.59
22
52
LEU
0.58
23
53
PHE
0.57
24
54
CYS
0.60
25
55
ALA
0.65
26
56
SER
0.59
27
57
ASP
0.52
28
66
HIS
0.43
29
67
ASN
0.39
30
68
VAL
0.39
31
69
TRP
0.39
32
70
ALA
0.39
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -1.32 .. 1.30
-1.32
1.30
#
Residue identifier
Residue name
DAQscore[SS]
1
31
ALA
0.50
2
32
GLU
0.44
3
33
ASN
0.39
4
34
LEU
0.32
5
35
TRP
0.29
6
36
VAL
0.25
7
37
THR
0.24
8
38
VAL
0.23
9
39
TYR
0.23
10
40
TYR
0.23
11
41
GLY
0.21
12
42
VAL
0.15
13
43
PRO
0.15
14
44
VAL
0.16
15
45
TRP
0.08
16
46
LYS
-0.05
17
47
ASP
-0.11
18
48
ALA
-0.17
19
49
GLU
-0.23
20
50
THR
-0.28
21
51
THR
-0.28
22
52
LEU
-0.29
23
53
PHE
-0.27
24
54
CYS
-0.29
25
55
ALA
-0.29
26
56
SER
-0.32
27
57
ASP
-0.34
28
66
HIS
-0.57
29
67
ASN
-0.57
30
68
VAL
-0.49
31
69
TRP
-0.49
32
70
ALA
-0.49
3D View
Download PDB file DAQ[Total]
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DAQ Score Table