21422 6VWN l v1-0
21422_6vwn_l_v1-0
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RCSB PDB: 6VWN
EMDB: 21422
Structure title 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Method ELECTRON MICROSCOPY
Resolution 3.4 Å
Source organism Escherichia coli
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
4    ​A​​G​​I​​N​​I​​P​​D​​H​​K​​H​14   ​A​​V​​I​​A​​L​​T​​S​​I​​Y​​G​24   ​V​​G​​K​​T​​R​​S​​K​​A​​I​​L​34   ​A​​A​​A​​G​​I​​A​​E​​D​​V​​K​44   ​I​​S​​E​​L​​S​​E​​G​​Q​​I​​D​54   ​T​​L​​R​​D​​E​​V​​A​​K​​F​​V​64   ​V​​E​​G​​D​​L​​R​​R​​E​​I​​S​74   ​M​​S​​I​​K​​R​​L​​M​​D​​L​​G​84   ​C​​Y​​R​​G​​L​​R​​H​​R​​R​​G​94   ​L​​P​​V​​R​​G​​Q​​R​​T​​K​​T​104  ​N​​A​​R​​T​​R​​K​​G​​P​​R​​K​114  ​P​
colorbar

DAQ Score Table

Score range in the table: -0.25 .. 0.40
-0.25
0.40
#
Residue identifier
Residue name
DAQscore[AA]
1
4
ALA
0.15
2
5
GLY
0.19
3
6
ILE
0.22
4
7
ASN
0.23
5
8
ILE
0.27
6
9
PRO
0.33
7
10
ASP
0.32
8
11
HIS
0.31
9
12
LYS
0.33
10
13
HIS
0.27
11
14
ALA
0.30
12
15
VAL
0.33
13
16
ILE
0.39
14
17
ALA
0.38
15
18
LEU
0.40
16
19
THR
0.36
17
20
SER
0.35
18
21
ILE
0.33
19
22
TYR
0.29
20
23
GLY
0.26
21
24
VAL
0.23
22
25
GLY
0.20
23
26
LYS
0.17
24
27
THR
0.11
25
28
ARG
0.09
26
29
SER
0.10
27
30
LYS
0.07
28
31
ALA
0.02
29
32
ILE
0.06
30
33
LEU
-0.03
31
34
ALA
-0.08
32
35
ALA
-0.08
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
4    ​A​​G​​I​​N​​I​​P​​D​​H​​K​​H​14   ​A​​V​​I​​A​​L​​T​​S​​I​​Y​​G​24   ​V​​G​​K​​T​​R​​S​​K​​A​​I​​L​34   ​A​​A​​A​​G​​I​​A​​E​​D​​V​​K​44   ​I​​S​​E​​L​​S​​E​​G​​Q​​I​​D​54   ​T​​L​​R​​D​​E​​V​​A​​K​​F​​V​64   ​V​​E​​G​​D​​L​​R​​R​​E​​I​​S​74   ​M​​S​​I​​K​​R​​L​​M​​D​​L​​G​84   ​C​​Y​​R​​G​​L​​R​​H​​R​​R​​G​94   ​L​​P​​V​​R​​G​​Q​​R​​T​​K​​T​104  ​N​​A​​R​​T​​R​​K​​G​​P​​R​​K​114  ​P​
colorbar

DAQ Score Table

Score range in the table: -0.21 .. 0.43
-0.21
0.43
#
Residue identifier
Residue name
DAQscore[ATOM]
1
4
ALA
0.21
2
5
GLY
0.23
3
6
ILE
0.21
4
7
ASN
0.27
5
8
ILE
0.25
6
9
PRO
0.30
7
10
ASP
0.32
8
11
HIS
0.29
9
12
LYS
0.25
10
13
HIS
0.28
11
14
ALA
0.28
12
15
VAL
0.28
13
16
ILE
0.27
14
17
ALA
0.24
15
18
LEU
0.24
16
19
THR
0.23
17
20
SER
0.23
18
21
ILE
0.23
19
22
TYR
0.18
20
23
GLY
0.22
21
24
VAL
0.21
22
25
GLY
0.21
23
26
LYS
0.15
24
27
THR
0.16
25
28
ARG
0.05
26
29
SER
0.03
27
30
LYS
0.06
28
31
ALA
0.09
29
32
ILE
0.03
30
33
LEU
-0.06
31
34
ALA
-0.07
32
35
ALA
-0.04
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Sequence of
4    ​A​​G​​I​​N​​I​​P​​D​​H​​K​​H​14   ​A​​V​​I​​A​​L​​T​​S​​I​​Y​​G​24   ​V​​G​​K​​T​​R​​S​​K​​A​​I​​L​34   ​A​​A​​A​​G​​I​​A​​E​​D​​V​​K​44   ​I​​S​​E​​L​​S​​E​​G​​Q​​I​​D​54   ​T​​L​​R​​D​​E​​V​​A​​K​​F​​V​64   ​V​​E​​G​​D​​L​​R​​R​​E​​I​​S​74   ​M​​S​​I​​K​​R​​L​​M​​D​​L​​G​84   ​C​​Y​​R​​G​​L​​R​​H​​R​​R​​G​94   ​L​​P​​V​​R​​G​​Q​​R​​T​​K​​T​104  ​N​​A​​R​​T​​R​​K​​G​​P​​R​​K​114  ​P​
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DAQ Score Table

Score range in the table: -0.32 .. 0.51
-0.32
0.51
#
Residue identifier
Residue name
DAQscore[SS]
1
4
ALA
0.09
2
5
GLY
0.13
3
6
ILE
0.08
4
7
ASN
0.13
5
8
ILE
0.17
6
9
PRO
0.21
7
10
ASP
0.22
8
11
HIS
0.18
9
12
LYS
0.13
10
13
HIS
0.09
11
14
ALA
0.08
12
15
VAL
0.04
13
16
ILE
0.05
14
17
ALA
0.07
15
18
LEU
0.05
16
19
THR
0.06
17
20
SER
0.03
18
21
ILE
0.00
19
22
TYR
-0.05
20
23
GLY
-0.01
21
24
VAL
-0.07
22
25
GLY
-0.13
23
26
LYS
-0.21
24
27
THR
-0.25
25
28
ARG
-0.26
26
29
SER
-0.27
27
30
LYS
-0.23
28
31
ALA
-0.20
29
32
ILE
-0.16
30
33
LEU
-0.15
31
34
ALA
-0.13
32
35
ALA
-0.23
3D View
Download PDB file DAQ[Total]
Render Map
Sequence of
4    ​A​​G​​I​​N​​I​​P​​D​​H​​K​​H​14   ​A​​V​​I​​A​​L​​T​​S​​I​​Y​​G​24   ​V​​G​​K​​T​​R​​S​​K​​A​​I​​L​34   ​A​​A​​A​​G​​I​​A​​E​​D​​V​​K​44   ​I​​S​​E​​L​​S​​E​​G​​Q​​I​​D​54   ​T​​L​​R​​D​​E​​V​​A​​K​​F​​V​64   ​V​​E​​G​​D​​L​​R​​R​​E​​I​​S​74   ​M​​S​​I​​K​​R​​L​​M​​D​​L​​G​84   ​C​​Y​​R​​G​​L​​R​​H​​R​​R​​G​94   ​L​​P​​V​​R​​G​​Q​​R​​T​​K​​T​104  ​N​​A​​R​​T​​R​​K​​G​​P​​R​​K​114  ​P​
colorbar

DAQ Score Table

Score range in the table: -0.61 .. 1.11
-0.61
1.11
#
Residue identifier
Residue name
DAQscore[Total]
1
4
ALA
0.44
2
5
GLY
0.55
3
6
ILE
0.51
4
7
ASN
0.63
5
8
ILE
0.70
6
9
PRO
0.84
7
10
ASP
0.85
8
11
HIS
0.78
9
12
LYS
0.71
10
13
HIS
0.64
11
14
ALA
0.66
12
15
VAL
0.65
13
16
ILE
0.71
14
17
ALA
0.69
15
18
LEU
0.69
16
19
THR
0.65
17
20
SER
0.61
18
21
ILE
0.56
19
22
TYR
0.42
20
23
GLY
0.47
21
24
VAL
0.37
22
25
GLY
0.28
23
26
LYS
0.11
24
27
THR
0.02
25
28
ARG
-0.13
26
29
SER
-0.14
27
30
LYS
-0.09
28
31
ALA
-0.10
29
32
ILE
-0.07
30
33
LEU
-0.24
31
34
ALA
-0.27
32
35
ALA
-0.35