21429 6VX4 G v1-2
21429_6vx4_G_v1-2
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RCSB PDB: 6VX4
EMDB: 21429
Structure title Density-fitted Model Structure of Antibody Variable Domains of TyTx11 in Complex with Typhoid Toxin
Method ELECTRON MICROSCOPY
Resolution 3.12 Å
Source organism Salmonella enterica subsp. enterica serovar Typhi str. CT18
3D View
Download PDB file DAQ[AA]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.06 .. 1.17
-0.06
1.17
#
Residue identifier
Residue name
DAQscore[AA]
1
19
VAL
0.21
2
20
ASP
0.42
3
21
PHE
0.47
4
22
VAL
0.54
5
23
TYR
0.43
6
24
ARG
0.47
7
25
VAL
0.48
8
26
ASP
0.54
9
27
SER
0.54
10
28
THR
0.60
11
29
PRO
0.84
12
30
PRO
0.79
13
31
ASP
0.73
14
32
VAL
0.59
15
33
ILE
0.58
16
34
PHE
0.66
17
35
ARG
0.58
18
36
ASP
0.65
19
37
GLY
0.67
20
38
PHE
0.63
21
39
SER
0.56
22
40
LEU
0.55
23
41
LEU
0.57
24
42
GLY
0.72
25
43
TYR
0.71
26
44
ASN
0.77
27
45
ARG
0.69
28
46
ASN
0.70
29
47
PHE
0.46
30
48
GLN
0.28
31
49
GLN
0.39
32
50
PHE
0.46
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
19   ​V​​D​​F​​V​​Y​​R​​V​​D​​S​​T​29   ​P​​P​​D​​V​​I​​F​​R​​D​​G​​F​39   ​S​​L​​L​​G​​Y​​N​​R​​N​​F​​Q​49   ​Q​​F​​I​​S​​G​​R​​S​​C​​S​​G​59   ​G​​S​​S​​D​​S​​R​​Y​​I​​A​​T​69   ​T​​S​​S​​V​​N​​Q​​T​​Y​​A​​I​79   ​A​​R​​A​​Y​​Y​​S​​R​​S​​T​​F​89   ​K​​G​​N​​L​​Y​​R​​Y​​Q​​I​​R​99   ​A​​D​​N​​N​​F​​Y​​S​​L​​L​​P​109  ​S​​I​​T​​Y​​L​​E​​T​​Q​​G​​G​119  ​H​​F​​N​​A​​Y​​E​​K​​T​​M​​M​129  ​R​​L​​Q​​R​​E​​Y​​V​​S​​T​​L​139  ​S​​I​​L​​P​​E​​N​​I​​Q​​K​​A​149  ​V​​A​​L​​V​​Y​​D​​S​​A​​T​​G​159  ​L​​V​​K​​D​​G​​V​​S​​T​​M​​N​169  ​A​​S​​Y​​L​​G​​L​​S​​T​​T​​S​179  ​N​​P​​G​​V​​I​​P​​F​​L​​P​​E​189  ​P​​Q​​T​​Y​​T​​Q​​Q​​R​​I​​D​199  ​A​​F​​G​​P​​L​​I​​S​​S​​C​​F​209  ​S​​I​​G​​S​​V​​C​​H​​S​​H​​R​219  ​G​​Q​​R​​A​​D​​V​​Y​​N​​M​​S​229  ​F​​Y​​D​​A​​R​​P​​V​​I​​E​​L​239  ​I​​L​​S​​K​
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DAQ Score Table

Score range in the table: -0.25 .. 0.91
-0.25
0.91
#
Residue identifier
Residue name
DAQscore[ATOM]
1
19
VAL
0.79
2
20
ASP
0.72
3
21
PHE
0.77
4
22
VAL
0.84
5
23
TYR
0.64
6
24
ARG
0.64
7
25
VAL
0.62
8
26
ASP
0.66
9
27
SER
0.66
10
28
THR
0.60
11
29
PRO
0.69
12
30
PRO
0.69
13
31
ASP
0.64
14
32
VAL
0.57
15
33
ILE
0.51
16
34
PHE
0.50
17
35
ARG
0.46
18
36
ASP
0.53
19
37
GLY
0.48
20
38
PHE
0.53
21
39
SER
0.61
22
40
LEU
0.54
23
41
LEU
0.53
24
42
GLY
0.65
25
43
TYR
0.66
26
44
ASN
0.64
27
45
ARG
0.65
28
46
ASN
0.60
29
47
PHE
0.51
30
48
GLN
0.32
31
49
GLN
0.40
32
50
PHE
0.34
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.60 .. 0.87
-1.60
0.87
#
Residue identifier
Residue name
DAQscore[SS]
1
19
VAL
0.62
2
20
ASP
0.61
3
21
PHE
0.58
4
22
VAL
0.61
5
23
TYR
0.65
6
24
ARG
0.68
7
25
VAL
0.67
8
26
ASP
0.68
9
27
SER
0.65
10
28
THR
0.64
11
29
PRO
0.62
12
30
PRO
0.63
13
31
ASP
0.58
14
32
VAL
0.51
15
33
ILE
0.46
16
34
PHE
0.40
17
35
ARG
0.36
18
36
ASP
0.38
19
37
GLY
0.38
20
38
PHE
0.40
21
39
SER
0.43
22
40
LEU
0.48
23
41
LEU
0.49
24
42
GLY
0.47
25
43
TYR
0.41
26
44
ASN
0.39
27
45
ARG
0.36
28
46
ASN
0.36
29
47
PHE
0.29
30
48
GLN
0.28
31
49
GLN
0.27
32
50
PHE
0.30
3D View
Download PDB file DAQ[Total]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.43 .. 2.38
-0.43
2.38
#
Residue identifier
Residue name
DAQscore[Total]
1
19
VAL
1.62
2
20
ASP
1.74
3
21
PHE
1.82
4
22
VAL
1.99
5
23
TYR
1.71
6
24
ARG
1.78
7
25
VAL
1.77
8
26
ASP
1.87
9
27
SER
1.85
10
28
THR
1.84
11
29
PRO
2.14
12
30
PRO
2.10
13
31
ASP
1.95
14
32
VAL
1.67
15
33
ILE
1.55
16
34
PHE
1.56
17
35
ARG
1.40
18
36
ASP
1.56
19
37
GLY
1.53
20
38
PHE
1.56
21
39
SER
1.61
22
40
LEU
1.57
23
41
LEU
1.59
24
42
GLY
1.84
25
43
TYR
1.77
26
44
ASN
1.80
27
45
ARG
1.70
28
46
ASN
1.66
29
47
PHE
1.27
30
48
GLN
0.89
31
49
GLN
1.06
32
50
PHE
1.10