21429 6VX4 G v1-2
Structure title Density-fitted Model Structure of Antibody Variable Domains of TyTx11 in Complex with Typhoid Toxin
Method ELECTRON MICROSCOPY
Resolution 3.12 Å
Source organism Salmonella enterica subsp. enterica serovar Typhi str. CT18

Sequence of
19   ​V​​D​​F​​V​​Y​​R​​V​​D​​S​​T​29   ​P​​P​​D​​V​​I​​F​​R​​D​​G​​F​39   ​S​​L​​L​​G​​Y​​N​​R​​N​​F​​Q​49   ​Q​​F​​I​​S​​G​​R​​S​​C​​S​​G​59   ​G​​S​​S​​D​​S​​R​​Y​​I​​A​​T​69   ​T​​S​​S​​V​​N​​Q​​T​​Y​​A​​I​79   ​A​​R​​A​​Y​​Y​​S​​R​​S​​T​​F​89   ​K​​G​​N​​L​​Y​​R​​Y​​Q​​I​​R​99   ​A​​D​​N​​N​​F​​Y​​S​​L​​L​​P​109  ​S​​I​​T​​Y​​L​​E​​T​​Q​​G​​G​119  ​H​​F​​N​​A​​Y​​E​​K​​T​​M​​M​129  ​R​​L​​Q​​R​​E​​Y​​V​​S​​T​​L​139  ​S​​I​​L​​P​​E​​N​​I​​Q​​K​​A​149  ​V​​A​​L​​V​​Y​​D​​S​​A​​T​​G​159  ​L​​V​​K​​D​​G​​V​​S​​T​​M​​N​169  ​A​​S​​Y​​L​​G​​L​​S​​T​​T​​S​179  ​N​​P​​G​​V​​I​​P​​F​​L​​P​​E​189  ​P​​Q​​T​​Y​​T​​Q​​Q​​R​​I​​D​199  ​A​​F​​G​​P​​L​​I​​S​​S​​C​​F​209  ​S​​I​​G​​S​​V​​C​​H​​S​​H​​R​219  ​G​​Q​​R​​A​​D​​V​​Y​​N​​M​​S​229  ​F​​Y​​D​​A​​R​​P​​V​​I​​E​​L​239  ​I​​L​​S​​K​
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DAQ Score Table

Score range in the table: -0.06 .. 1.17
-0.06
1.17
#
Residue identifier
Residue name
DAQscore[AA]
1
19
VAL
0.21
2
20
ASP
0.42
3
21
PHE
0.47
4
22
VAL
0.54
5
23
TYR
0.43
6
24
ARG
0.47
7
25
VAL
0.48
8
26
ASP
0.54
9
27
SER
0.54
10
28
THR
0.60
11
29
PRO
0.84
12
30
PRO
0.79
13
31
ASP
0.73
14
32
VAL
0.59
15
33
ILE
0.58
16
34
PHE
0.66
17
35
ARG
0.58
18
36
ASP
0.65
19
37
GLY
0.67
20
38
PHE
0.63
21
39
SER
0.56
22
40
LEU
0.55
23
41
LEU
0.57
24
42
GLY
0.72
25
43
TYR
0.71
26
44
ASN
0.77
27
45
ARG
0.69
28
46
ASN
0.70
29
47
PHE
0.46
30
48
GLN
0.28
31
49
GLN
0.39
32
50
PHE
0.46
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.25 .. 0.91
-0.25
0.91
#
Residue identifier
Residue name
DAQscore[ATOM]
1
19
VAL
0.79
2
20
ASP
0.72
3
21
PHE
0.77
4
22
VAL
0.84
5
23
TYR
0.64
6
24
ARG
0.64
7
25
VAL
0.62
8
26
ASP
0.66
9
27
SER
0.66
10
28
THR
0.60
11
29
PRO
0.69
12
30
PRO
0.69
13
31
ASP
0.64
14
32
VAL
0.57
15
33
ILE
0.51
16
34
PHE
0.50
17
35
ARG
0.46
18
36
ASP
0.53
19
37
GLY
0.48
20
38
PHE
0.53
21
39
SER
0.61
22
40
LEU
0.54
23
41
LEU
0.53
24
42
GLY
0.65
25
43
TYR
0.66
26
44
ASN
0.64
27
45
ARG
0.65
28
46
ASN
0.60
29
47
PHE
0.51
30
48
GLN
0.32
31
49
GLN
0.40
32
50
PHE
0.34
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.60 .. 0.87
-1.60
0.87
#
Residue identifier
Residue name
DAQscore[SS]
1
19
VAL
0.62
2
20
ASP
0.61
3
21
PHE
0.58
4
22
VAL
0.61
5
23
TYR
0.65
6
24
ARG
0.68
7
25
VAL
0.67
8
26
ASP
0.68
9
27
SER
0.65
10
28
THR
0.64
11
29
PRO
0.62
12
30
PRO
0.63
13
31
ASP
0.58
14
32
VAL
0.51
15
33
ILE
0.46
16
34
PHE
0.40
17
35
ARG
0.36
18
36
ASP
0.38
19
37
GLY
0.38
20
38
PHE
0.40
21
39
SER
0.43
22
40
LEU
0.48
23
41
LEU
0.49
24
42
GLY
0.47
25
43
TYR
0.41
26
44
ASN
0.39
27
45
ARG
0.36
28
46
ASN
0.36
29
47
PHE
0.29
30
48
GLN
0.28
31
49
GLN
0.27
32
50
PHE
0.30
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.43 .. 2.38
-0.43
2.38
#
Residue identifier
Residue name
DAQscore[Total]
1
19
VAL
1.62
2
20
ASP
1.74
3
21
PHE
1.82
4
22
VAL
1.99
5
23
TYR
1.71
6
24
ARG
1.78
7
25
VAL
1.77
8
26
ASP
1.87
9
27
SER
1.85
10
28
THR
1.84
11
29
PRO
2.14
12
30
PRO
2.10
13
31
ASP
1.95
14
32
VAL
1.67
15
33
ILE
1.55
16
34
PHE
1.56
17
35
ARG
1.40
18
36
ASP
1.56
19
37
GLY
1.53
20
38
PHE
1.56
21
39
SER
1.61
22
40
LEU
1.57
23
41
LEU
1.59
24
42
GLY
1.84
25
43
TYR
1.77
26
44
ASN
1.80
27
45
ARG
1.70
28
46
ASN
1.66
29
47
PHE
1.27
30
48
GLN
0.89
31
49
GLN
1.06
32
50
PHE
1.10