22127 6XCM S v2-1
22127_6xcm_S_v2-1
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RCSB PDB: 6XCM
EMDB: 22127
Structure title Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1)
Method ELECTRON MICROSCOPY
Resolution 3.42 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: -0.04 .. 0.16
-0.04
0.16
#
Residue identifier
Residue name
DAQscore[AA]
1
2
SER
-0.01
2
3
ALA
-0.04
3
4
LEU
-0.03
4
5
THR
0.01
5
6
GLN
0.06
6
7
PRO
0.08
7
8
PRO
0.08
8
9
SER
0.06
9
11
ALA
0.04
10
12
SER
0.03
11
13
GLY
0.04
12
14
SER
0.05
13
15
PRO
0.06
14
16
GLY
0.08
15
17
GLN
0.09
16
18
SER
0.10
17
19
VAL
0.08
18
20
THR
0.09
19
21
ILE
0.12
20
22
SER
0.13
21
23
CYS
0.15
22
24
THR
0.16
23
25
GLY
0.13
24
26
THR
0.13
25
27
SER
0.13
26
27
SER
0.13
27
27
ASP
0.13
28
27
VAL
0.13
29
28
GLY
0.13
30
29
GLY
0.13
31
30
TYR
0.12
32
31
LYS
0.11
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: -0.21 .. 0.14
-0.21
0.14
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
SER
0.10
2
3
ALA
0.06
3
4
LEU
0.05
4
5
THR
0.07
5
6
GLN
0.07
6
7
PRO
0.08
7
8
PRO
0.09
8
9
SER
0.06
9
11
ALA
0.05
10
12
SER
0.04
11
13
GLY
0.02
12
14
SER
0.01
13
15
PRO
0.02
14
16
GLY
0.02
15
17
GLN
-0.01
16
18
SER
0.01
17
19
VAL
0.01
18
20
THR
0.03
19
21
ILE
0.02
20
22
SER
0.05
21
23
CYS
0.05
22
24
THR
0.02
23
25
GLY
0.02
24
26
THR
0.03
25
27
SER
0.03
26
27
SER
0.03
27
27
ASP
0.03
28
27
VAL
0.03
29
28
GLY
0.06
30
29
GLY
0.07
31
30
TYR
0.08
32
31
LYS
0.08
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
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DAQ Score Table

Score range in the table: -0.24 .. 0.34
-0.24
0.34
#
Residue identifier
Residue name
DAQscore[SS]
1
2
SER
-0.02
2
3
ALA
0.00
3
4
LEU
-0.03
4
5
THR
-0.01
5
6
GLN
0.01
6
7
PRO
0.03
7
8
PRO
0.05
8
9
SER
0.04
9
11
ALA
-0.03
10
12
SER
-0.01
11
13
GLY
-0.03
12
14
SER
-0.03
13
15
PRO
-0.04
14
16
GLY
-0.07
15
17
GLN
-0.08
16
18
SER
-0.10
17
19
VAL
-0.09
18
20
THR
-0.09
19
21
ILE
-0.10
20
22
SER
-0.11
21
23
CYS
-0.09
22
24
THR
-0.07
23
25
GLY
-0.07
24
26
THR
-0.10
25
27
SER
-0.11
26
27
SER
-0.11
27
27
ASP
-0.11
28
27
VAL
-0.11
29
28
GLY
-0.10
30
29
GLY
-0.08
31
30
TYR
-0.03
32
31
LYS
-0.06
3D View
Download PDB file DAQ[Total]
Render Map
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DAQ Score Table