25543 7SYW R v1-1
25543_7syw_R_v1-1
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RCSB PDB: 7SYW
EMDB: 25543
Structure title Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
Method ELECTRON MICROSCOPY
Resolution 3.7 Å
Source organism Oryctolagus cuniculus
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
5    ​G​​P​​L​​Q​​S​​V​​Q​​V​​F​​G​15   ​R​​K​​K​​T​​A​​T​​A​​V​​A​​H​25   ​C​​K​​R​​G​​N​​G​​L​​I​​K​​V​35   ​N​​G​​R​​P​​L​​E​​M​​I​​E​​P​45   ​R​​T​​L​​Q​​Y​​K​​L​​L​​E​​P​55   ​V​​L​​L​​L​​G​​K​​E​​R​​F​​A​65   ​G​​V​​D​​I​​R​​V​​R​​V​​K​​G​75   ​G​​G​​H​​V​​A​​Q​​I​​Y​​A​​I​85   ​R​​Q​​S​​I​​S​​K​​A​​L​​V​​A​95   ​Y​​Y​​Q​​K​​Y​​V​​D​​E​​A​​S​105  ​K​​K​​E​​I​​K​​D​​I​​L​​I​​Q​115  ​Y​​D​​R​​T​​L​​L​​V​​A​​D​​P​125  ​R​​R​​C​​E​​S​​K​​K​​F​​G​​G​135  ​P​​G​​A​​R​​A​​R​​Y​​Q​​K​​S​145  ​Y​​R​
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DAQ Score Table

Score range in the table: 0.29 .. 1.53
0.29
1.53
#
Residue identifier
Residue name
DAQscore[AA]
1
5
GLY
0.65
2
6
PRO
0.72
3
7
LEU
0.58
4
8
GLN
0.48
5
9
SER
0.52
6
10
VAL
0.62
7
11
GLN
0.66
8
12
VAL
0.69
9
13
PHE
0.72
10
14
GLY
0.81
11
15
ARG
0.88
12
16
LYS
0.83
13
17
LYS
0.94
14
18
THR
0.96
15
19
ALA
0.97
16
20
THR
0.87
17
21
ALA
1.01
18
22
VAL
0.90
19
23
ALA
0.93
20
24
HIS
0.90
21
25
CYS
0.93
22
26
LYS
1.02
23
27
ARG
1.10
24
28
GLY
1.03
25
29
ASN
1.03
26
30
GLY
1.00
27
31
LEU
1.00
28
32
ILE
0.94
29
33
LYS
0.91
30
34
VAL
0.84
31
35
ASN
0.89
32
36
GLY
0.88
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
5    ​G​​P​​L​​Q​​S​​V​​Q​​V​​F​​G​15   ​R​​K​​K​​T​​A​​T​​A​​V​​A​​H​25   ​C​​K​​R​​G​​N​​G​​L​​I​​K​​V​35   ​N​​G​​R​​P​​L​​E​​M​​I​​E​​P​45   ​R​​T​​L​​Q​​Y​​K​​L​​L​​E​​P​55   ​V​​L​​L​​L​​G​​K​​E​​R​​F​​A​65   ​G​​V​​D​​I​​R​​V​​R​​V​​K​​G​75   ​G​​G​​H​​V​​A​​Q​​I​​Y​​A​​I​85   ​R​​Q​​S​​I​​S​​K​​A​​L​​V​​A​95   ​Y​​Y​​Q​​K​​Y​​V​​D​​E​​A​​S​105  ​K​​K​​E​​I​​K​​D​​I​​L​​I​​Q​115  ​Y​​D​​R​​T​​L​​L​​V​​A​​D​​P​125  ​R​​R​​C​​E​​S​​K​​K​​F​​G​​G​135  ​P​​G​​A​​R​​A​​R​​Y​​Q​​K​​S​145  ​Y​​R​
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DAQ Score Table

Score range in the table: 0.14 .. 1.03
0.14
1.03
#
Residue identifier
Residue name
DAQscore[ATOM]
1
5
GLY
0.46
2
6
PRO
0.51
3
7
LEU
0.35
4
8
GLN
0.29
5
9
SER
0.14
6
10
VAL
0.19
7
11
GLN
0.26
8
12
VAL
0.30
9
13
PHE
0.34
10
14
GLY
0.37
11
15
ARG
0.36
12
16
LYS
0.35
13
17
LYS
0.42
14
18
THR
0.38
15
19
ALA
0.38
16
20
THR
0.36
17
21
ALA
0.32
18
22
VAL
0.28
19
23
ALA
0.25
20
24
HIS
0.30
21
25
CYS
0.30
22
26
LYS
0.37
23
27
ARG
0.45
24
28
GLY
0.58
25
29
ASN
0.61
26
30
GLY
0.58
27
31
LEU
0.62
28
32
ILE
0.64
29
33
LYS
0.69
30
34
VAL
0.76
31
35
ASN
0.72
32
36
GLY
0.69
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.55 .. 1.04
-0.55
1.04
#
Residue identifier
Residue name
DAQscore[SS]
1
5
GLY
0.66
2
6
PRO
0.69
3
7
LEU
0.64
4
8
GLN
0.64
5
9
SER
0.55
6
10
VAL
0.55
7
11
GLN
0.59
8
12
VAL
0.62
9
13
PHE
0.67
10
14
GLY
0.72
11
15
ARG
0.78
12
16
LYS
0.84
13
17
LYS
0.90
14
18
THR
0.89
15
19
ALA
0.89
16
20
THR
0.83
17
21
ALA
0.78
18
22
VAL
0.73
19
23
ALA
0.72
20
24
HIS
0.74
21
25
CYS
0.77
22
26
LYS
0.80
23
27
ARG
0.81
24
28
GLY
0.85
25
29
ASN
0.84
26
30
GLY
0.76
27
31
LEU
0.74
28
32
ILE
0.67
29
33
LYS
0.50
30
34
VAL
0.45
31
35
ASN
0.41
32
36
GLY
0.21
3D View
Download PDB file DAQ[Total]
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: 0.70 .. 3.44
0.70
3.44
#
Residue identifier
Residue name
DAQscore[Total]
1
5
GLY
1.77
2
6
PRO
1.92
3
7
LEU
1.58
4
8
GLN
1.40
5
9
SER
1.21
6
10
VAL
1.37
7
11
GLN
1.51
8
12
VAL
1.62
9
13
PHE
1.73
10
14
GLY
1.90
11
15
ARG
2.02
12
16
LYS
2.02
13
17
LYS
2.26
14
18
THR
2.23
15
19
ALA
2.23
16
20
THR
2.06
17
21
ALA
2.11
18
22
VAL
1.92
19
23
ALA
1.90
20
24
HIS
1.94
21
25
CYS
2.00
22
26
LYS
2.18
23
27
ARG
2.35
24
28
GLY
2.46
25
29
ASN
2.47
26
30
GLY
2.34
27
31
LEU
2.35
28
32
ILE
2.25
29
33
LYS
2.09
30
34
VAL
2.04
31
35
ASN
2.01
32
36
GLY
1.77