25862 7TF5 D v1-0
25862_7tf5_D_v1-0
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RCSB PDB: 7TF5
EMDB: 25862
Structure title Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein
Method ELECTRON MICROSCOPY
Resolution 3.16 Å
Source organism Severe acute respiratory syndrome coronavirus 2
3D View
Download PDB file DAQ[AA]
Render Map
SequenceNo structure available
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DAQ Score Table

Score range in the table: -0.20 .. 1.37
-0.20
1.37
#
Residue identifier
Residue name
DAQscore[AA]
1
14
GLN
-0.02
2
15
CYS
-0.03
3
16
VAL
-0.02
4
17
ASN
-0.02
5
18
LEU
-0.02
6
19
THR
-0.02
7
20
THR
-0.02
8
21
ARG
-0.01
9
22
THR
-0.05
10
23
GLN
-0.04
11
24
LEU
-0.06
12
25
PRO
-0.07
13
26
PRO
-0.11
14
27
ALA
-0.07
15
28
TYR
0.00
16
29
THR
0.06
17
30
ASN
0.16
18
31
SER
0.20
19
32
PHE
0.25
20
33
THR
0.26
21
34
ARG
0.30
22
35
GLY
0.32
23
36
VAL
0.37
24
37
TYR
0.39
25
38
TYR
0.41
26
39
PRO
0.47
27
40
ASP
0.49
28
41
LYS
0.53
29
42
VAL
0.57
30
43
PHE
0.56
31
44
ARG
0.59
32
45
SER
0.60
3D View
Download PDB file DAQ[Cα]
Render Map
SequenceNo structure available
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DAQ Score Table

Score range in the table: 0.05 .. 1.20
0.05
1.20
#
Residue identifier
Residue name
DAQscore[ATOM]
1
14
GLN
0.18
2
15
CYS
0.18
3
16
VAL
0.18
4
17
ASN
0.18
5
18
LEU
0.18
6
19
THR
0.19
7
20
THR
0.20
8
21
ARG
0.21
9
22
THR
0.18
10
23
GLN
0.17
11
24
LEU
0.15
12
25
PRO
0.16
13
26
PRO
0.06
14
27
ALA
0.07
15
28
TYR
0.06
16
29
THR
0.08
17
30
ASN
0.13
18
31
SER
0.16
19
32
PHE
0.18
20
33
THR
0.20
21
34
ARG
0.21
22
35
GLY
0.23
23
36
VAL
0.28
24
37
TYR
0.30
25
38
TYR
0.31
26
39
PRO
0.30
27
40
ASP
0.25
28
41
LYS
0.32
29
42
VAL
0.37
30
43
PHE
0.42
31
44
ARG
0.43
32
45
SER
0.51
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.14 .. 1.22
-1.14
1.22
#
Residue identifier
Residue name
DAQscore[SS]
1
14
GLN
-0.23
2
15
CYS
-0.20
3
16
VAL
-0.17
4
17
ASN
-0.15
5
18
LEU
-0.15
6
19
THR
-0.13
7
20
THR
-0.12
8
21
ARG
-0.12
9
22
THR
-0.11
10
23
GLN
-0.11
11
24
LEU
-0.11
12
25
PRO
-0.10
13
26
PRO
-0.07
14
27
ALA
-0.03
15
28
TYR
0.01
16
29
THR
0.02
17
30
ASN
0.04
18
31
SER
0.05
19
32
PHE
0.06
20
33
THR
0.07
21
34
ARG
0.06
22
35
GLY
0.05
23
36
VAL
0.04
24
37
TYR
0.03
25
38
TYR
0.04
26
39
PRO
0.05
27
40
ASP
0.06
28
41
LYS
0.06
29
42
VAL
0.07
30
43
PHE
0.07
31
44
ARG
0.08
32
45
SER
0.08
3D View
Download PDB file DAQ[Total]
Render Map
Processing file... [656431/656431]
SequenceNo structure available
colorbar

DAQ Score Table