25990 7TLY B v1-2
25990_7tly_B_v1-2
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RCSB PDB: 7TLY
EMDB: 25990
Structure title SARS-CoV-2 S B.1.1.529 Omicron variant (RBD + S309 Local Refinement)
Method ELECTRON MICROSCOPY
Resolution 3.0 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
2    ​I​​V​​L​​T​​Q​​S​​P​​G​​T​​L​15   ​P​​G​​E​​R​​A​​T​​L​​S​​C​​R​25   ​A​​S​​Q​​T​​V​​S​​S​​T​​S​​L​35   ​A​​W​​Y​​Q​​Q​​K​​P​​G​​Q​​A​45   ​P​​R​​L​​L​​I​​Y​​G​​A​​S​​S​55   ​R​​A​​T​​G​​I​​P​​D​​R​​F​​S​65   ​G​​S​​G​​S​​G​​T​​D​​F​​T​​L​75   ​T​​I​​S​​R​​L​​E​​P​​E​​D​​F​85   ​A​​V​​Y​​Y​​C​​Q​​Q​​H​​D​​T​95   ​S​​L​​T​​F​​G​​G​​G​​T​​K​​V​105  ​E​
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DAQ Score Table

Score range in the table: -0.27 .. 0.12
-0.27
0.12
#
Residue identifier
Residue name
DAQscore[AA]
1
2
ILE
-0.27
2
3
VAL
-0.27
3
4
LEU
-0.27
4
5
THR
-0.27
5
6
GLN
-0.24
6
7
SER
-0.24
7
8
PRO
-0.21
8
9
GLY
-0.23
9
10
THR
-0.19
10
11
LEU
-0.25
11
15
PRO
-0.24
12
16
GLY
-0.22
13
17
GLU
-0.20
14
18
ARG
-0.20
15
19
ALA
-0.14
16
20
THR
-0.12
17
21
LEU
-0.09
18
22
SER
-0.08
19
23
CYS
-0.07
20
24
ARG
-0.07
21
25
ALA
-0.06
22
26
SER
-0.05
23
27
GLN
-0.06
24
28
THR
0.00
25
29
VAL
-0.01
26
30
SER
0.05
27
31
SER
0.07
28
32
THR
0.09
29
33
SER
0.08
30
34
LEU
0.08
31
35
ALA
0.05
32
36
TRP
0.05
3D View
Download PDB file DAQ[Cα]
Render Map
Converting to mmCIF
SequenceNo structure available
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DAQ Score Table

Score range in the table: -0.20 .. 0.10
-0.20
0.10
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
ILE
-0.17
2
3
VAL
-0.17
3
4
LEU
-0.17
4
5
THR
-0.17
5
6
GLN
-0.15
6
7
SER
-0.15
7
8
PRO
-0.14
8
9
GLY
-0.11
9
10
THR
-0.08
10
11
LEU
-0.16
11
15
PRO
-0.20
12
16
GLY
-0.19
13
17
GLU
-0.17
14
18
ARG
-0.14
15
19
ALA
-0.06
16
20
THR
-0.06
17
21
LEU
-0.03
18
22
SER
-0.02
19
23
CYS
0.00
20
24
ARG
0.00
21
25
ALA
0.00
22
26
SER
0.01
23
27
GLN
0.01
24
28
THR
-0.01
25
29
VAL
-0.02
26
30
SER
0.05
27
31
SER
0.04
28
32
THR
0.05
29
33
SER
0.06
30
34
LEU
0.07
31
35
ALA
0.04
32
36
TRP
0.05
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.20 .. 0.26
-0.20
0.26
#
Residue identifier
Residue name
DAQscore[SS]
1
2
ILE
-0.20
2
3
VAL
-0.20
3
4
LEU
-0.20
4
5
THR
-0.20
5
6
GLN
-0.18
6
7
SER
-0.17
7
8
PRO
-0.15
8
9
GLY
-0.15
9
10
THR
-0.17
10
11
LEU
-0.15
11
15
PRO
-0.07
12
16
GLY
-0.08
13
17
GLU
-0.08
14
18
ARG
-0.07
15
19
ALA
-0.06
16
20
THR
-0.03
17
21
LEU
-0.01
18
22
SER
-0.01
19
23
CYS
-0.01
20
24
ARG
-0.01
21
25
ALA
-0.01
22
26
SER
0.02
23
27
GLN
0.06
24
28
THR
0.12
25
29
VAL
0.17
26
30
SER
0.18
27
31
SER
0.17
28
32
THR
0.17
29
33
SER
0.16
30
34
LEU
0.17
31
35
ALA
0.17
32
36
TRP
0.18
3D View
Download PDB file DAQ[Total]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.65 .. 0.39
-0.65
0.39
#
Residue identifier
Residue name
DAQscore[Total]
1
2
ILE
-0.65
2
3
VAL
-0.65
3
4
LEU
-0.65
4
5
THR
-0.65
5
6
GLN
-0.57
6
7
SER
-0.56
7
8
PRO
-0.50
8
9
GLY
-0.49
9
10
THR
-0.44
10
11
LEU
-0.56
11
15
PRO
-0.51
12
16
GLY
-0.49
13
17
GLU
-0.45
14
18
ARG
-0.41
15
19
ALA
-0.26
16
20
THR
-0.21
17
21
LEU
-0.14
18
22
SER
-0.11
19
23
CYS
-0.08
20
24
ARG
-0.08
21
25
ALA
-0.07
22
26
SER
-0.02
23
27
GLN
0.00
24
28
THR
0.10
25
29
VAL
0.13
26
30
SER
0.28
27
31
SER
0.28
28
32
THR
0.32
29
33
SER
0.30
30
34
LEU
0.32
31
35
ALA
0.27
32
36
TRP
0.28