27068 8CY6 D v1-1
27068_8cy6_D_v1-1
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RCSB PDB: 8CY6
EMDB: 27068
Structure title SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-65
Method ELECTRON MICROSCOPY
Resolution 3.2 Å
Source organism Lama glama
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: -0.18 .. 0.11
-0.18
0.11
#
Residue identifier
Residue name
DAQscore[AA]
1
15
ASN
0.02
2
16
SER
0.03
3
17
HIS
0.02
4
18
VAL
0.02
5
19
GLN
0.05
6
20
LEU
0.00
7
21
VAL
0.07
8
22
GLU
0.07
9
23
SER
0.08
10
24
GLY
0.08
11
25
GLY
0.09
12
26
GLY
0.11
13
27
LEU
0.08
14
28
VAL
0.09
15
29
GLN
0.10
16
30
ALA
0.09
17
31
GLY
0.08
18
32
GLY
0.09
19
33
SER
0.08
20
34
LEU
0.08
21
35
ARG
0.08
22
36
LEU
0.06
23
37
SER
0.05
24
38
CYS
0.03
25
39
ALA
0.07
26
40
ALA
0.00
27
41
SER
0.01
28
42
GLY
0.00
29
43
THR
-0.03
30
44
ILE
-0.03
31
45
SER
-0.03
32
46
THR
-0.03
3D View
Download PDB file DAQ[Cα]
Render Map
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DAQ Score Table

Score range in the table: -0.09 .. 0.11
-0.09
0.11
#
Residue identifier
Residue name
DAQscore[ATOM]
1
15
ASN
0.04
2
16
SER
0.04
3
17
HIS
0.00
4
18
VAL
-0.02
5
19
GLN
-0.04
6
20
LEU
-0.05
7
21
VAL
-0.05
8
22
GLU
-0.05
9
23
SER
-0.05
10
24
GLY
-0.04
11
25
GLY
-0.02
12
26
GLY
-0.01
13
27
LEU
0.00
14
28
VAL
0.00
15
29
GLN
0.00
16
30
ALA
0.00
17
31
GLY
0.00
18
32
GLY
0.00
19
33
SER
0.00
20
34
LEU
0.01
21
35
ARG
0.01
22
36
LEU
0.02
23
37
SER
0.04
24
38
CYS
0.06
25
39
ALA
0.08
26
40
ALA
0.09
27
41
SER
0.10
28
42
GLY
0.11
29
43
THR
0.11
30
44
ILE
0.11
31
45
SER
0.11
32
46
THR
0.11
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -0.29 .. 0.08
-0.29
0.08
#
Residue identifier
Residue name
DAQscore[SS]
1
15
ASN
0.04
2
16
SER
0.05
3
17
HIS
0.00
4
18
VAL
-0.11
5
19
GLN
-0.16
6
20
LEU
-0.20
7
21
VAL
-0.19
8
22
GLU
-0.18
9
23
SER
-0.17
10
24
GLY
-0.17
11
25
GLY
-0.18
12
26
GLY
-0.16
13
27
LEU
-0.13
14
28
VAL
-0.13
15
29
GLN
-0.13
16
30
ALA
-0.13
17
31
GLY
-0.13
18
32
GLY
-0.14
19
33
SER
-0.14
20
34
LEU
-0.14
21
35
ARG
-0.15
22
36
LEU
-0.12
23
37
SER
-0.04
24
38
CYS
0.00
25
39
ALA
0.04
26
40
ALA
0.05
27
41
SER
0.05
28
42
GLY
0.05
29
43
THR
0.04
30
44
ILE
0.05
31
45
SER
0.04
32
46
THR
0.05
3D View
Download PDB file DAQ[Total]
Render Map
colorbar

DAQ Score Table