30794 7DOI C v1-1
30794_7doi_C_v1-1
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RCSB PDB: 7DOI
EMDB: 30794
Structure title Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
Method ELECTRON MICROSCOPY
Resolution 2.6 Å
Source organism Severe acute respiratory syndrome coronavirus 2
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
2    ​K​​M​​S​​D​​V​​K​​C​​T​​S​​V​12   ​V​​L​​L​​S​​V​​L​​Q​​Q​​L​​R​22   ​V​​E​​S​​S​​S​​K​​L​​W​​A​​Q​32   ​C​​V​​Q​​L​​H​​N​​D​​I​​L​​L​42   ​A​​K​​D​​T​​T​​E​​A​​F​​E​​K​52   ​M​​V​​S​​L​​L​​S​​V​​L​​L​​S​62   ​M​​Q​​G​​A​​V​​D​​I​​N​​K​
colorbar

DAQ Score Table

Score range in the table: -0.13 .. 1.46
-0.13
1.46
#
Residue identifier
Residue name
DAQscore[AA]
1
2
LYS
1.12
2
3
MET
1.08
3
4
SER
1.12
4
5
ASP
1.13
5
6
VAL
1.10
6
7
LYS
1.15
7
8
CYS
1.16
8
9
THR
1.17
9
10
SER
1.09
10
11
VAL
1.06
11
12
VAL
1.15
12
13
LEU
1.13
13
14
LEU
1.15
14
15
SER
1.08
15
16
VAL
1.05
16
17
LEU
1.10
17
18
GLN
1.11
18
19
GLN
0.97
19
20
LEU
1.04
20
21
ARG
1.04
21
22
VAL
1.06
22
23
GLU
1.12
23
24
SER
1.13
24
25
SER
1.18
25
26
SER
1.11
26
27
LYS
1.11
27
28
LEU
0.99
28
29
TRP
1.07
29
30
ALA
1.12
30
31
GLN
1.08
31
32
CYS
1.06
32
33
VAL
1.04
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
2    ​K​​M​​S​​D​​V​​K​​C​​T​​S​​V​12   ​V​​L​​L​​S​​V​​L​​Q​​Q​​L​​R​22   ​V​​E​​S​​S​​S​​K​​L​​W​​A​​Q​32   ​C​​V​​Q​​L​​H​​N​​D​​I​​L​​L​42   ​A​​K​​D​​T​​T​​E​​A​​F​​E​​K​52   ​M​​V​​S​​L​​L​​S​​V​​L​​L​​S​62   ​M​​Q​​G​​A​​V​​D​​I​​N​​K​
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DAQ Score Table

Score range in the table: 0.34 .. 1.21
0.34
1.21
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
LYS
1.12
2
3
MET
1.12
3
4
SER
1.16
4
5
ASP
1.18
5
6
VAL
1.21
6
7
LYS
1.20
7
8
CYS
1.15
8
9
THR
1.15
9
10
SER
1.13
10
11
VAL
0.96
11
12
VAL
0.97
12
13
LEU
0.88
13
14
LEU
0.86
14
15
SER
0.87
15
16
VAL
0.84
16
17
LEU
0.83
17
18
GLN
0.95
18
19
GLN
0.88
19
20
LEU
0.80
20
21
ARG
0.79
21
22
VAL
0.81
22
23
GLU
0.80
23
24
SER
0.81
24
25
SER
0.81
25
26
SER
0.85
26
27
LYS
0.88
27
28
LEU
0.88
28
29
TRP
0.91
29
30
ALA
1.10
30
31
GLN
1.08
31
32
CYS
1.09
32
33
VAL
1.04
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Sequence of
2    ​K​​M​​S​​D​​V​​K​​C​​T​​S​​V​12   ​V​​L​​L​​S​​V​​L​​Q​​Q​​L​​R​22   ​V​​E​​S​​S​​S​​K​​L​​W​​A​​Q​32   ​C​​V​​Q​​L​​H​​N​​D​​I​​L​​L​42   ​A​​K​​D​​T​​T​​E​​A​​F​​E​​K​52   ​M​​V​​S​​L​​L​​S​​V​​L​​L​​S​62   ​M​​Q​​G​​A​​V​​D​​I​​N​​K​
colorbar

DAQ Score Table

Score range in the table: 0.16 .. 0.43
0.16
0.43
#
Residue identifier
Residue name
DAQscore[SS]
1
2
LYS
0.29
2
3
MET
0.30
3
4
SER
0.31
4
5
ASP
0.31
5
6
VAL
0.32
6
7
LYS
0.32
7
8
CYS
0.32
8
9
THR
0.32
9
10
SER
0.31
10
11
VAL
0.31
11
12
VAL
0.35
12
13
LEU
0.36
13
14
LEU
0.34
14
15
SER
0.34
15
16
VAL
0.35
16
17
LEU
0.28
17
18
GLN
0.27
18
19
GLN
0.26
19
20
LEU
0.26
20
21
ARG
0.25
21
22
VAL
0.25
22
23
GLU
0.25
23
24
SER
0.25
24
25
SER
0.25
25
26
SER
0.25
26
27
LYS
0.25
27
28
LEU
0.25
28
29
TRP
0.27
29
30
ALA
0.27
30
31
GLN
0.24
31
32
CYS
0.23
32
33
VAL
0.28
3D View
Download PDB file DAQ[Total]
Render Map
Sequence of
2    ​K​​M​​S​​D​​V​​K​​C​​T​​S​​V​12   ​V​​L​​L​​S​​V​​L​​Q​​Q​​L​​R​22   ​V​​E​​S​​S​​S​​K​​L​​W​​A​​Q​32   ​C​​V​​Q​​L​​H​​N​​D​​I​​L​​L​42   ​A​​K​​D​​T​​T​​E​​A​​F​​E​​K​52   ​M​​V​​S​​L​​L​​S​​V​​L​​L​​S​62   ​M​​Q​​G​​A​​V​​D​​I​​N​​K​
colorbar

DAQ Score Table

Score range in the table: 0.37 .. 2.83
0.37
2.83
#
Residue identifier
Residue name
DAQscore[Total]
1
2
LYS
2.53
2
3
MET
2.50
3
4
SER
2.58
4
5
ASP
2.62
5
6
VAL
2.63
6
7
LYS
2.67
7
8
CYS
2.63
8
9
THR
2.64
9
10
SER
2.54
10
11
VAL
2.33
11
12
VAL
2.47
12
13
LEU
2.37
13
14
LEU
2.35
14
15
SER
2.30
15
16
VAL
2.24
16
17
LEU
2.21
17
18
GLN
2.33
18
19
GLN
2.11
19
20
LEU
2.11
20
21
ARG
2.08
21
22
VAL
2.13
22
23
GLU
2.17
23
24
SER
2.19
24
25
SER
2.25
25
26
SER
2.22
26
27
LYS
2.24
27
28
LEU
2.12
28
29
TRP
2.25
29
30
ALA
2.49
30
31
GLN
2.40
31
32
CYS
2.38
32
33
VAL
2.36