3239 5FN4 A v2-0
3239_5fn4_A_v2-0
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RCSB PDB: 5FN4
EMDB: 3239
Structure title Cryo-EM structure of gamma secretase in class 2 of the apo- state ensemble
Method ELECTRON MICROSCOPY
Resolution 4.0 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: 0.05 .. 1.15
0.05
1.15
#
Residue identifier
Residue name
DAQscore[AA]
1
34
ASN
0.36
2
35
SER
0.46
3
36
VAL
0.46
4
37
GLU
0.54
5
38
ARG
0.57
6
39
LYS
0.58
7
40
ILE
0.56
8
41
TYR
0.57
9
42
ILE
0.58
10
43
PRO
0.61
11
44
LEU
0.57
12
45
ASN
0.50
13
46
LYS
0.42
14
47
THR
0.39
15
48
ALA
0.33
16
49
PRO
0.41
17
50
CYS
0.47
18
51
VAL
0.44
19
52
ARG
0.45
20
53
LEU
0.48
21
54
LEU
0.41
22
55
ASN
0.43
23
56
ALA
0.38
24
57
THR
0.35
25
58
HIS
0.33
26
59
GLN
0.35
27
60
ILE
0.35
28
61
GLY
0.36
29
62
CYS
0.32
30
63
GLN
0.44
31
64
SER
0.57
32
65
SER
0.61
3D View
Download PDB file DAQ[Cα]
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.06 .. 0.87
-0.06
0.87
#
Residue identifier
Residue name
DAQscore[ATOM]
1
34
ASN
0.64
2
35
SER
0.47
3
36
VAL
0.42
4
37
GLU
0.47
5
38
ARG
0.54
6
39
LYS
0.57
7
40
ILE
0.52
8
41
TYR
0.54
9
42
ILE
0.56
10
43
PRO
0.59
11
44
LEU
0.62
12
45
ASN
0.67
13
46
LYS
0.62
14
47
THR
0.67
15
48
ALA
0.64
16
49
PRO
0.64
17
50
CYS
0.64
18
51
VAL
0.64
19
52
ARG
0.58
20
53
LEU
0.52
21
54
LEU
0.62
22
55
ASN
0.67
23
56
ALA
0.61
24
57
THR
0.57
25
58
HIS
0.55
26
59
GLN
0.56
27
60
ILE
0.55
28
61
GLY
0.55
29
62
CYS
0.53
30
63
GLN
0.53
31
64
SER
0.57
32
65
SER
0.56
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.02 .. 0.87
-1.02
0.87
#
Residue identifier
Residue name
DAQscore[SS]
1
34
ASN
-0.22
2
35
SER
-0.30
3
36
VAL
-0.26
4
37
GLU
-0.21
5
38
ARG
-0.28
6
39
LYS
-0.26
7
40
ILE
-0.22
8
41
TYR
-0.22
9
42
ILE
-0.18
10
43
PRO
-0.12
11
44
LEU
-0.10
12
45
ASN
-0.05
13
46
LYS
-0.02
14
47
THR
0.01
15
48
ALA
0.03
16
49
PRO
0.07
17
50
CYS
0.12
18
51
VAL
0.15
19
52
ARG
0.18
20
53
LEU
0.24
21
54
LEU
0.22
22
55
ASN
0.22
23
56
ALA
0.22
24
57
THR
0.32
25
58
HIS
0.35
26
59
GLN
0.35
27
60
ILE
0.38
28
61
GLY
0.40
29
62
CYS
0.41
30
63
GLN
0.47
31
64
SER
0.51
32
65
SER
0.58
3D View
Download PDB file DAQ[Total]
Render Map
Processing file... [423070/423070]
SequenceNo structure available
colorbar

DAQ Score Table