34128 7YVI I v1-0
Structure title Omicron BA.4/5 SARS-CoV-2 S in complex with TH236 Fab
Method ELECTRON MICROSCOPY
Resolution 3.7 Å
Source organism Homo sapiens

Sequence of
2    ​S​​A​​L​​T​​Q​​P​​A​​S​​V​​S​12   ​G​​S​​P​​G​​Q​​S​​I​​T​​I​​S​22   ​C​​T​​G​​T​​S​​S​​D​​V​​G​​G​32   ​Y​​N​​Y​​V​​S​​W​​Y​​Q​​Q​​H​42   ​P​​G​​K​​A​​P​​K​​L​​M​​I​​Y​52   ​D​​V​​S​​N​​R​​P​​S​​G​​V​​S​62   ​N​​R​​F​​S​​G​​S​​K​​S​​G​​N​72   ​T​​A​​S​​L​​T​​I​​S​​G​​L​​Q​82   ​A​​E​​D​​E​​A​​D​​Y​​Y​​C​​S​92   ​S​​Y​​T​​S​​S​​S​​T​​L​​Y​​V​102  ​F​​G​​T​​G​​T​​K​​V​​T​​V​​L​
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DAQ Score Table

Score range in the table: -0.06 .. 0.19
-0.06
0.19
#
Residue identifier
Residue name
DAQscore[AA]
1
2
SER
0.03
2
3
ALA
0.06
3
4
LEU
0.09
4
5
THR
0.08
5
6
GLN
0.10
6
7
PRO
0.12
7
8
ALA
0.12
8
9
SER
0.13
9
10
VAL
0.12
10
11
SER
0.09
11
12
GLY
0.09
12
13
SER
0.07
13
14
PRO
0.07
14
15
GLY
0.07
15
16
GLN
0.09
16
17
SER
0.12
17
18
ILE
0.16
18
19
THR
0.08
19
20
ILE
0.15
20
21
SER
0.13
21
22
CYS
0.11
22
23
THR
0.08
23
24
GLY
0.10
24
25
THR
0.08
25
26
SER
0.08
26
27
SER
0.04
27
28
ASP
0.00
28
29
VAL
0.00
29
30
GLY
0.01
30
31
GLY
-0.01
31
32
TYR
0.02
32
33
ASN
0.00
Converting to mmCIF
SequenceNo structure available
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DAQ Score Table

Score range in the table: -0.17 .. 0.20
-0.17
0.20
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
SER
0.19
2
3
ALA
0.18
3
4
LEU
0.18
4
5
THR
0.19
5
6
GLN
0.20
6
7
PRO
0.19
7
8
ALA
0.19
8
9
SER
0.15
9
10
VAL
0.14
10
11
SER
0.13
11
12
GLY
0.15
12
13
SER
0.15
13
14
PRO
0.14
14
15
GLY
0.14
15
16
GLN
0.12
16
17
SER
0.15
17
18
ILE
0.16
18
19
THR
0.15
19
20
ILE
0.12
20
21
SER
0.12
21
22
CYS
0.10
22
23
THR
0.10
23
24
GLY
0.10
24
25
THR
0.10
25
26
SER
0.06
26
27
SER
0.02
27
28
ASP
0.01
28
29
VAL
0.01
29
30
GLY
-0.02
30
31
GLY
-0.03
31
32
TYR
-0.03
32
33
ASN
-0.07
SequenceNo structure available
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DAQ Score Table

Score range in the table: -0.48 .. 0.05
-0.48
0.05
#
Residue identifier
Residue name
DAQscore[SS]
1
2
SER
-0.46
2
3
ALA
-0.43
3
4
LEU
-0.36
4
5
THR
-0.32
5
6
GLN
-0.27
6
7
PRO
-0.23
7
8
ALA
-0.21
8
9
SER
-0.14
9
10
VAL
-0.11
10
11
SER
-0.13
11
12
GLY
-0.23
12
13
SER
-0.29
13
14
PRO
-0.28
14
15
GLY
-0.31
15
16
GLN
-0.32
16
17
SER
-0.35
17
18
ILE
-0.35
18
19
THR
-0.35
19
20
ILE
-0.36
20
21
SER
-0.37
21
22
CYS
-0.36
22
23
THR
-0.38
23
24
GLY
-0.41
24
25
THR
-0.46
25
26
SER
-0.40
26
27
SER
-0.40
27
28
ASP
-0.40
28
29
VAL
-0.44
29
30
GLY
-0.34
30
31
GLY
-0.29
31
32
TYR
-0.21
32
33
ASN
-0.12
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.43 .. 0.20
-0.43
0.20
#
Residue identifier
Residue name
DAQscore[Total]
1
2
SER
-0.24
2
3
ALA
-0.19
3
4
LEU
-0.09
4
5
THR
-0.04
5
6
GLN
0.03
6
7
PRO
0.07
7
8
ALA
0.09
8
9
SER
0.14
9
10
VAL
0.15
10
11
SER
0.09
11
12
GLY
0.00
12
13
SER
-0.08
13
14
PRO
-0.08
14
15
GLY
-0.10
15
16
GLN
-0.11
16
17
SER
-0.08
17
18
ILE
-0.04
18
19
THR
-0.12
19
20
ILE
-0.09
20
21
SER
-0.12
21
22
CYS
-0.15
22
23
THR
-0.20
23
24
GLY
-0.21
24
25
THR
-0.28
25
26
SER
-0.26
26
27
SER
-0.34
27
28
ASP
-0.39
28
29
VAL
-0.43
29
30
GLY
-0.35
30
31
GLY
-0.33
31
32
TYR
-0.21
32
33
ASN
-0.19