34258 8GTN O v1-2
34258_8gtn_O_v1-2
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RCSB PDB: 8GTN
EMDB: 34258
Structure title Cryo-EM structure of the gasdermin B pore
Method ELECTRON MICROSCOPY
Resolution 3.17 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.21 .. 0.87
-0.21
0.87
#
Residue identifier
Residue name
DAQscore[AA]
1
1
MET
0.70
2
2
PHE
0.65
3
3
SER
0.78
4
4
VAL
0.87
5
5
PHE
0.70
6
6
GLU
0.65
7
7
GLU
0.67
8
8
ILE
0.57
9
9
THR
0.57
10
10
ARG
0.63
11
11
ILE
0.76
12
12
VAL
0.78
13
13
VAL
0.66
14
14
LYS
0.68
15
15
GLU
0.67
16
16
MET
0.69
17
17
ASP
0.65
18
18
ALA
0.66
19
19
GLY
0.73
20
20
GLY
0.69
21
21
ASP
0.69
22
22
MET
0.63
23
23
ILE
0.52
24
24
ALA
0.59
25
25
VAL
0.68
26
26
ARG
0.69
27
27
SER
0.77
28
28
LEU
0.79
29
29
VAL
0.74
30
30
ASP
0.57
31
31
ALA
0.60
32
32
ASP
0.72
3D View
Download PDB file DAQ[Cα]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: 0.13 .. 0.89
0.13
0.89
#
Residue identifier
Residue name
DAQscore[ATOM]
1
1
MET
0.71
2
2
PHE
0.76
3
3
SER
0.70
4
4
VAL
0.77
5
5
PHE
0.79
6
6
GLU
0.75
7
7
GLU
0.79
8
8
ILE
0.81
9
9
THR
0.71
10
10
ARG
0.67
11
11
ILE
0.69
12
12
VAL
0.69
13
13
VAL
0.74
14
14
LYS
0.75
15
15
GLU
0.78
16
16
MET
0.81
17
17
ASP
0.88
18
18
ALA
0.83
19
19
GLY
0.81
20
20
GLY
0.79
21
21
ASP
0.73
22
22
MET
0.78
23
23
ILE
0.72
24
24
ALA
0.68
25
25
VAL
0.74
26
26
ARG
0.71
27
27
SER
0.68
28
28
LEU
0.76
29
29
VAL
0.81
30
30
ASP
0.83
31
31
ALA
0.85
32
32
ASP
0.76
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Sequence of
1    ​M​​F​​S​​V​​F​​E​​E​​I​​T​​R​11   ​I​​V​​V​​K​​E​​M​​D​​A​​G​​G​21   ​D​​M​​I​​A​​V​​R​​S​​L​​V​​D​31   ​A​​D​​R​​F​​R​​C​​F​​H​​L​​V​41   ​G​​E​​K​​R​​T​​F​​F​​G​​C​​R​51   ​H​​Y​​T​​T​​G​​L​​T​​L​​M​​D​61   ​I​​L​​D​​T​​K​​A​​E​​F​​Q​​I​87   ​L​​D​​N​​V​​D​​S​​T​​G​​E​​L​97   ​I​​V​​R​​L​​P​​K​​E​​I​​T​​I​107  ​S​​G​​S​​F​​Q​​G​​F​​H​​H​​Q​117  ​K​​I​​K​​I​​S​​E​​N​​R​​I​​S​127  ​Q​​Q​​Y​​L​​A​​T​​L​​E​​N​​R​137  ​K​​L​​K​​R​​E​​L​​P​​F​​S​​F​147  ​R​​S​​I​​N​​T​​R​​E​​N​​L​​Y​157  ​L​​V​​T​​E​​T​​L​​E​​T​​V​​K​167  ​E​​E​​T​​L​​K​​S​​D​​R​​Q​​Y​177  ​K​​F​​W​​S​​Q​​I​​S​​Q​​G​​H​187  ​L​​S​​Y​​K​​H​​K​​G​​Q​​R​​E​197  ​V​​T​​I​​P​​P​​N​​R​​V​​L​​S​207  ​Y​​R​​V​​K​​Q​​L​​V​​F​​P​​N​217  ​K​​E​​T​​M​​N​​I​​H​​F​​R​​G​227  ​K​​T​​K​​S​​F​​P​​E​
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DAQ Score Table

Score range in the table: -0.46 .. 0.92
-0.46
0.92
#
Residue identifier
Residue name
DAQscore[SS]
1
1
MET
0.71
2
2
PHE
0.79
3
3
SER
0.85
4
4
VAL
0.91
5
5
PHE
0.91
6
6
GLU
0.88
7
7
GLU
0.83
8
8
ILE
0.76
9
9
THR
0.72
10
10
ARG
0.72
11
11
ILE
0.76
12
12
VAL
0.85
13
13
VAL
0.92
14
14
LYS
0.91
15
15
GLU
0.83
16
16
MET
0.76
17
17
ASP
0.72
18
18
ALA
0.64
19
19
GLY
0.58
20
20
GLY
0.53
21
21
ASP
0.48
22
22
MET
0.41
23
23
ILE
0.35
24
24
ALA
0.31
25
25
VAL
0.29
26
26
ARG
0.29
27
27
SER
0.29
28
28
LEU
0.29
29
29
VAL
0.26
30
30
ASP
0.25
31
31
ALA
0.24
32
32
ASP
0.25
3D View
Download PDB file DAQ[Total]
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.48 .. 2.54
-0.48
2.54
#
Residue identifier
Residue name
DAQscore[Total]
1
1
MET
2.12
2
2
PHE
2.20
3
3
SER
2.33
4
4
VAL
2.54
5
5
PHE
2.40
6
6
GLU
2.28
7
7
GLU
2.29
8
8
ILE
2.14
9
9
THR
2.00
10
10
ARG
2.02
11
11
ILE
2.22
12
12
VAL
2.32
13
13
VAL
2.32
14
14
LYS
2.34
15
15
GLU
2.28
16
16
MET
2.27
17
17
ASP
2.25
18
18
ALA
2.13
19
19
GLY
2.12
20
20
GLY
2.01
21
21
ASP
1.90
22
22
MET
1.81
23
23
ILE
1.59
24
24
ALA
1.58
25
25
VAL
1.71
26
26
ARG
1.68
27
27
SER
1.74
28
28
LEU
1.84
29
29
VAL
1.82
30
30
ASP
1.65
31
31
ALA
1.69
32
32
ASP
1.72