34954 8HQY D v1-2
34954_8hqy_D_v1-2
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RCSB PDB: 8HQY
EMDB: 34954
Structure title Cryo-EM structure of SSX1 bound to the H2AK119Ub nucleosome at a resolution of 3.05 angstrom
Method ELECTRON MICROSCOPY
Resolution 3.05 Å
Source organism Homo sapiens
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: 0.92 .. 1.55
0.92
1.55
#
Residue identifier
Residue name
DAQscore[AA]
1
34
LYS
1.26
2
35
GLU
1.35
3
36
SER
1.37
4
37
TYR
1.35
5
38
SER
1.37
6
39
VAL
1.34
7
40
TYR
1.37
8
41
VAL
1.48
9
42
TYR
1.41
10
43
LYS
1.36
11
44
VAL
1.43
12
45
LEU
1.46
13
46
LYS
1.50
14
47
GLN
1.50
15
48
VAL
1.49
16
49
HIS
1.53
17
50
PRO
1.55
18
51
ASP
1.55
19
52
THR
1.54
20
53
GLY
1.48
21
54
ILE
1.37
22
55
SER
1.35
23
56
SER
1.37
24
57
LYS
1.32
25
58
ALA
1.33
26
59
MET
1.33
27
60
GLY
1.23
28
61
ILE
1.35
29
62
MET
1.39
30
63
ASN
1.18
31
64
SER
1.19
32
65
PHE
1.22
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: 0.54 .. 1.13
0.54
1.13
#
Residue identifier
Residue name
DAQscore[ATOM]
1
34
LYS
0.86
2
35
GLU
0.94
3
36
SER
0.90
4
37
TYR
0.91
5
38
SER
0.95
6
39
VAL
0.94
7
40
TYR
0.96
8
41
VAL
0.99
9
42
TYR
0.96
10
43
LYS
0.93
11
44
VAL
0.95
12
45
LEU
0.98
13
46
LYS
1.00
14
47
GLN
1.03
15
48
VAL
0.96
16
49
HIS
0.96
17
50
PRO
0.93
18
51
ASP
0.86
19
52
THR
0.90
20
53
GLY
0.94
21
54
ILE
0.92
22
55
SER
0.93
23
56
SER
0.84
24
57
LYS
0.79
25
58
ALA
0.84
26
59
MET
0.83
27
60
GLY
0.81
28
61
ILE
0.86
29
62
MET
0.79
30
63
ASN
0.70
31
64
SER
0.79
32
65
PHE
0.79
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -0.78 .. 0.47
-0.78
0.47
#
Residue identifier
Residue name
DAQscore[SS]
1
34
LYS
0.17
2
35
GLU
0.18
3
36
SER
0.19
4
37
TYR
0.19
5
38
SER
0.19
6
39
VAL
0.17
7
40
TYR
0.22
8
41
VAL
0.24
9
42
TYR
0.26
10
43
LYS
0.28
11
44
VAL
0.21
12
45
LEU
0.21
13
46
LYS
0.14
14
47
GLN
0.17
15
48
VAL
0.17
16
49
HIS
0.17
17
50
PRO
0.18
18
51
ASP
0.18
19
52
THR
0.17
20
53
GLY
0.17
21
54
ILE
0.17
22
55
SER
0.17
23
56
SER
0.17
24
57
LYS
0.18
25
58
ALA
0.20
26
59
MET
0.16
27
60
GLY
0.15
28
61
ILE
0.13
29
62
MET
0.11
30
63
ASN
0.11
31
64
SER
0.14
32
65
PHE
0.22
3D View
Download PDB file DAQ[Total]
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DAQ Score Table

Score range in the table: 0.89 .. 2.71
0.89
2.71
#
Residue identifier
Residue name
DAQscore[Total]
1
34
LYS
2.29
2
35
GLU
2.46
3
36
SER
2.45
4
37
TYR
2.45
5
38
SER
2.51
6
39
VAL
2.45
7
40
TYR
2.55
8
41
VAL
2.71
9
42
TYR
2.63
10
43
LYS
2.57
11
44
VAL
2.59
12
45
LEU
2.65
13
46
LYS
2.64
14
47
GLN
2.69
15
48
VAL
2.62
16
49
HIS
2.67
17
50
PRO
2.65
18
51
ASP
2.58
19
52
THR
2.61
20
53
GLY
2.59
21
54
ILE
2.46
22
55
SER
2.45
23
56
SER
2.38
24
57
LYS
2.29
25
58
ALA
2.36
26
59
MET
2.31
27
60
GLY
2.18
28
61
ILE
2.34
29
62
MET
2.29
30
63
ASN
1.99
31
64
SER
2.11
32
65
PHE
2.24