41448 8TOE M v1-1
Structure title Escherichia coli RNA polymerase unwinding intermediate (I1c) at the lambda PR promoter
Method ELECTRON MICROSCOPY
Resolution 2.9 Å
Source organism Escherichia coli K-12

Sequence of
250  ​D​​P​​I​​L​​L​​R​​P​​V​​D​​D​260  ​L​​E​​L​​T​​V​​R​​S​​A​​N​​C​270  ​L​​K​​A​​E​​A​​I​​H​​Y​​I​​G​280  ​D​​L​​V​​Q​​R​​T​​E​​V​​E​​L​290  ​L​​K​​T​​P​​N​​L​​G​​K​​K​​S​300  ​L​​T​​E​​I​​K​​D​​V​​L​​A​​S​310  ​R​​G​​L​​S​​L​​G​​M​​R​​L​​E​320  ​N​​W​​P​
colorbar

DAQ Score Table

Score range in the table: -0.07 .. 0.21
-0.07
0.21
#
Residue identifier
Residue name
DAQscore[AA]
1
250
ASP
0.13
2
251
PRO
0.12
3
252
ILE
0.17
4
253
LEU
0.17
5
254
LEU
0.16
6
255
ARG
0.13
7
256
PRO
0.08
8
257
VAL
0.07
9
258
ASP
0.07
10
259
ASP
0.07
11
260
LEU
0.09
12
261
GLU
0.12
13
262
LEU
0.14
14
263
THR
0.10
15
264
VAL
0.11
16
265
ARG
0.06
17
266
SER
0.09
18
267
ALA
0.05
19
268
ASN
0.03
20
269
CYS
0.04
21
270
LEU
0.01
22
271
LYS
-0.06
23
272
ALA
-0.06
24
273
GLU
-0.03
25
274
ALA
-0.04
26
275
ILE
-0.02
27
276
HIS
-0.01
28
277
TYR
0.01
29
278
ILE
-0.03
30
279
GLY
-0.02
31
280
ASP
-0.03
32
281
LEU
-0.06
Sequence of
250  ​D​​P​​I​​L​​L​​R​​P​​V​​D​​D​260  ​L​​E​​L​​T​​V​​R​​S​​A​​N​​C​270  ​L​​K​​A​​E​​A​​I​​H​​Y​​I​​G​280  ​D​​L​​V​​Q​​R​​T​​E​​V​​E​​L​290  ​L​​K​​T​​P​​N​​L​​G​​K​​K​​S​300  ​L​​T​​E​​I​​K​​D​​V​​L​​A​​S​310  ​R​​G​​L​​S​​L​​G​​M​​R​​L​​E​320  ​N​​W​​P​
colorbar

DAQ Score Table

Score range in the table: 0.02 .. 0.08
0.02
0.08
#
Residue identifier
Residue name
DAQscore[ATOM]
1
250
ASP
0.05
2
251
PRO
0.05
3
252
ILE
0.06
4
253
LEU
0.06
5
254
LEU
0.06
6
255
ARG
0.07
7
256
PRO
0.06
8
257
VAL
0.07
9
258
ASP
0.07
10
259
ASP
0.05
11
260
LEU
0.05
12
261
GLU
0.05
13
262
LEU
0.05
14
263
THR
0.05
15
264
VAL
0.05
16
265
ARG
0.05
17
266
SER
0.05
18
267
ALA
0.03
19
268
ASN
0.03
20
269
CYS
0.04
21
270
LEU
0.04
22
271
LYS
0.04
23
272
ALA
0.03
24
273
GLU
0.04
25
274
ALA
0.04
26
275
ILE
0.04
27
276
HIS
0.03
28
277
TYR
0.03
29
278
ILE
0.05
30
279
GLY
0.05
31
280
ASP
0.06
32
281
LEU
0.06
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.10 .. 0.13
-0.10
0.13
#
Residue identifier
Residue name
DAQscore[SS]
1
250
ASP
0.00
2
251
PRO
0.02
3
252
ILE
0.07
4
253
LEU
0.05
5
254
LEU
0.06
6
255
ARG
0.05
7
256
PRO
0.07
8
257
VAL
0.09
9
258
ASP
0.09
10
259
ASP
0.09
11
260
LEU
0.10
12
261
GLU
0.13
13
262
LEU
0.13
14
263
THR
0.11
15
264
VAL
0.11
16
265
ARG
0.11
17
266
SER
0.08
18
267
ALA
0.05
19
268
ASN
0.00
20
269
CYS
0.03
21
270
LEU
0.03
22
271
LYS
0.02
23
272
ALA
0.04
24
273
GLU
0.03
25
274
ALA
0.03
26
275
ILE
0.02
27
276
HIS
0.01
28
277
TYR
0.00
29
278
ILE
-0.02
30
279
GLY
-0.06
31
280
ASP
-0.06
32
281
LEU
-0.06
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.08 .. 0.32
-0.08
0.32
#
Residue identifier
Residue name
DAQscore[Total]
1
250
ASP
0.18
2
251
PRO
0.19
3
252
ILE
0.29
4
253
LEU
0.28
5
254
LEU
0.28
6
255
ARG
0.24
7
256
PRO
0.21
8
257
VAL
0.22
9
258
ASP
0.23
10
259
ASP
0.21
11
260
LEU
0.24
12
261
GLU
0.30
13
262
LEU
0.32
14
263
THR
0.26
15
264
VAL
0.27
16
265
ARG
0.22
17
266
SER
0.22
18
267
ALA
0.14
19
268
ASN
0.06
20
269
CYS
0.10
21
270
LEU
0.08
22
271
LYS
-0.01
23
272
ALA
0.02
24
273
GLU
0.04
25
274
ALA
0.02
26
275
ILE
0.05
27
276
HIS
0.04
28
277
TYR
0.04
29
278
ILE
-0.01
30
279
GLY
-0.03
31
280
ASP
-0.03
32
281
LEU
-0.06