42041 8U9Y A v1-0
42041_8u9y_A_v1-0
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RCSB PDB: 8U9Y
EMDB: 42041
Structure title CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
Method ELECTRON MICROSCOPY
Resolution 3.7 Å
Source organism Hepacivirus
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
409  ​Q​​R​​V​​Q​​L​​I​​N​​T​​N​​G​419  ​S​​W​​H​​I​​N​​R​​T​​A​​L​​N​429  ​C​​N​​D​​S​​L​​H​​T​​G​​F​​L​439  ​A​​A​​L​​F​​Y​​T​​H​​K​​F​​N​449  ​A​​S​​G​​C​​P​​E​​R​​M​​A​​H​459  ​C​​R​​P​​I​​D​​E​​F​​A​​Q​​G​469  ​W​​G​​P​​I​​T​​Y​​A​​E​​G​​H​479  ​G​​S​​D​​Q​​R​​P​​Y​​C​​W​​H​489  ​Y​​A​​P​​R​​Q​​C​​G​​T​​I​​P​499  ​A​​S​​Q​​V​​C​​G​​P​​V​​Y​​C​509  ​F​​T​​P​​S​​P​​V​​V​​V​​G​​T​519  ​T​​D​​R​​F​​G​​A​​P​​T​​Y​​T​529  ​W​​G​​E​​N​​E​​T​​D​​V​​L​​I​539  ​L​​N​​N​​T​​R​​P​​P​​Q​​G​​N​549  ​W​​F​​G​​C​​T​​W​​M​​N​​S​​T​559  ​G​​F​​T​​K​​T​​C​​G​​G​​P​​P​569  ​C​​N​​I​​G​​G​​V​​G​​N​​N​​T​579  ​L​​T​​C​​P​​T​​D​​C​​F​​R​​K​589  ​H​​P​​E​​A​​T​​Y​​T​​K​​C​​G​599  ​S​​G​​P​​W​​L​​T​​P​​R​​C​​L​609  ​V​​D​​Y​​P​​Y​​R​​L​​W​​H​​Y​619  ​P​​C​​T​​V​​N​​F​​T​​I​​F​​K​629  ​V​​R​​M​​Y​​V​​G​​G​​V​​E​​H​639  ​R​​L​​N​​A​​A​​C​​N​​I​​G​​H​649  ​H​​H​​H​​H​​H​
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DAQ Score Table

Score range in the table: -0.17 .. 0.80
-0.17
0.80
#
Residue identifier
Residue name
DAQscore[AA]
1
409
GLN
-0.09
2
410
ARG
-0.03
3
411
VAL
-0.04
4
412
GLN
-0.01
5
413
LEU
-0.15
6
414
ILE
-0.14
7
415
ASN
-0.05
8
416
THR
-0.12
9
417
ASN
-0.09
10
418
GLY
0.00
11
419
SER
0.08
12
420
TRP
0.14
13
421
HIS
0.16
14
422
ILE
0.15
15
423
ASN
0.19
16
424
ARG
0.19
17
425
THR
0.17
18
426
ALA
0.20
19
427
LEU
0.28
20
428
ASN
0.17
21
429
CYS
0.24
22
430
ASN
0.27
23
431
ASP
0.36
24
432
SER
0.51
25
433
LEU
0.57
26
434
HIS
0.53
27
435
THR
0.59
28
436
GLY
0.58
29
437
PHE
0.49
30
438
LEU
0.40
31
439
ALA
0.42
32
440
ALA
0.40
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
409  ​Q​​R​​V​​Q​​L​​I​​N​​T​​N​​G​419  ​S​​W​​H​​I​​N​​R​​T​​A​​L​​N​429  ​C​​N​​D​​S​​L​​H​​T​​G​​F​​L​439  ​A​​A​​L​​F​​Y​​T​​H​​K​​F​​N​449  ​A​​S​​G​​C​​P​​E​​R​​M​​A​​H​459  ​C​​R​​P​​I​​D​​E​​F​​A​​Q​​G​469  ​W​​G​​P​​I​​T​​Y​​A​​E​​G​​H​479  ​G​​S​​D​​Q​​R​​P​​Y​​C​​W​​H​489  ​Y​​A​​P​​R​​Q​​C​​G​​T​​I​​P​499  ​A​​S​​Q​​V​​C​​G​​P​​V​​Y​​C​509  ​F​​T​​P​​S​​P​​V​​V​​V​​G​​T​519  ​T​​D​​R​​F​​G​​A​​P​​T​​Y​​T​529  ​W​​G​​E​​N​​E​​T​​D​​V​​L​​I​539  ​L​​N​​N​​T​​R​​P​​P​​Q​​G​​N​549  ​W​​F​​G​​C​​T​​W​​M​​N​​S​​T​559  ​G​​F​​T​​K​​T​​C​​G​​G​​P​​P​569  ​C​​N​​I​​G​​G​​V​​G​​N​​N​​T​579  ​L​​T​​C​​P​​T​​D​​C​​F​​R​​K​589  ​H​​P​​E​​A​​T​​Y​​T​​K​​C​​G​599  ​S​​G​​P​​W​​L​​T​​P​​R​​C​​L​609  ​V​​D​​Y​​P​​Y​​R​​L​​W​​H​​Y​619  ​P​​C​​T​​V​​N​​F​​T​​I​​F​​K​629  ​V​​R​​M​​Y​​V​​G​​G​​V​​E​​H​639  ​R​​L​​N​​A​​A​​C​​N​​I​​G​​H​649  ​H​​H​​H​​H​​H​
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DAQ Score Table

Score range in the table: -0.05 .. 0.90
-0.05
0.90
#
Residue identifier
Residue name
DAQscore[ATOM]
1
409
GLN
0.28
2
410
ARG
0.27
3
411
VAL
0.22
4
412
GLN
0.32
5
413
LEU
0.30
6
414
ILE
0.31
7
415
ASN
0.29
8
416
THR
0.18
9
417
ASN
0.25
10
418
GLY
0.32
11
419
SER
0.32
12
420
TRP
0.43
13
421
HIS
0.46
14
422
ILE
0.43
15
423
ASN
0.35
16
424
ARG
0.36
17
425
THR
0.34
18
426
ALA
0.48
19
427
LEU
0.47
20
428
ASN
0.47
21
429
CYS
0.50
22
430
ASN
0.43
23
431
ASP
0.34
24
432
SER
0.42
25
433
LEU
0.33
26
434
HIS
0.30
27
435
THR
0.46
28
436
GLY
0.47
29
437
PHE
0.45
30
438
LEU
0.43
31
439
ALA
0.32
32
440
ALA
0.30
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.90 .. 0.39
-0.90
0.39
#
Residue identifier
Residue name
DAQscore[SS]
1
409
GLN
-0.68
2
410
ARG
-0.67
3
411
VAL
-0.66
4
412
GLN
-0.59
5
413
LEU
-0.53
6
414
ILE
-0.51
7
415
ASN
-0.52
8
416
THR
-0.49
9
417
ASN
-0.49
10
418
GLY
-0.48
11
419
SER
-0.49
12
420
TRP
-0.51
13
421
HIS
-0.51
14
422
ILE
-0.46
15
423
ASN
-0.37
16
424
ARG
-0.29
17
425
THR
-0.27
18
426
ALA
-0.29
19
427
LEU
-0.30
20
428
ASN
-0.31
21
429
CYS
-0.29
22
430
ASN
-0.21
23
431
ASP
-0.17
24
432
SER
-0.15
25
433
LEU
-0.13
26
434
HIS
-0.13
27
435
THR
-0.18
28
436
GLY
-0.20
29
437
PHE
-0.18
30
438
LEU
-0.18
31
439
ALA
-0.15
32
440
ALA
-0.12
3D View
Download PDB file DAQ[Total]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table