44841 9BRR 3 v1-1
44841_9brr_3_v1-1
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RCSB PDB: 9BRR
EMDB: 44841
Structure title Intact V-ATPase State 3 in synaptophysin knock-out isolated synaptic vesicles
Method ELECTRON MICROSCOPY
Resolution 4.5 Å
Source organism Mus musculus
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: -0.14 .. 1.10
-0.14
1.10
#
Residue identifier
Residue name
DAQscore[AA]
1
39
TYR
0.41
2
40
LEU
0.41
3
41
SER
0.37
4
42
GLN
0.38
5
43
PRO
0.53
6
44
ARG
0.62
7
45
LEU
0.63
8
46
THR
0.69
9
47
TYR
0.72
10
48
LYS
0.73
11
49
THR
0.87
12
50
VAL
0.85
13
51
SER
0.86
14
52
GLY
0.93
15
53
VAL
0.89
16
54
ASN
0.96
17
55
GLY
1.01
18
56
PRO
1.01
19
57
LEU
1.07
20
58
VAL
0.98
21
59
ILE
1.05
22
60
LEU
1.10
23
61
ASP
1.05
24
62
HIS
0.96
25
63
VAL
0.92
26
64
LYS
1.00
27
65
PHE
1.00
28
66
PRO
1.00
29
67
ARG
0.94
30
68
TYR
0.87
31
69
ALA
0.90
32
70
GLU
0.86
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: -0.54 .. 1.14
-0.54
1.14
#
Residue identifier
Residue name
DAQscore[ATOM]
1
39
TYR
0.80
2
40
LEU
0.88
3
41
SER
0.94
4
42
GLN
0.79
5
43
PRO
0.71
6
44
ARG
0.61
7
45
LEU
0.56
8
46
THR
0.51
9
47
TYR
0.49
10
48
LYS
0.53
11
49
THR
0.59
12
50
VAL
0.69
13
51
SER
0.76
14
52
GLY
0.85
15
53
VAL
0.81
16
54
ASN
0.82
17
55
GLY
0.78
18
56
PRO
0.68
19
57
LEU
0.56
20
58
VAL
0.49
21
59
ILE
0.44
22
60
LEU
0.41
23
61
ASP
0.48
24
62
HIS
0.58
25
63
VAL
0.71
26
64
LYS
0.78
27
65
PHE
0.86
28
66
PRO
0.94
29
67
ARG
0.86
30
68
TYR
0.81
31
69
ALA
0.77
32
70
GLU
0.70
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -0.69 .. 1.19
-0.69
1.19
#
Residue identifier
Residue name
DAQscore[SS]
1
39
TYR
0.04
2
40
LEU
0.03
3
41
SER
0.09
4
42
GLN
0.16
5
43
PRO
0.25
6
44
ARG
0.34
7
45
LEU
0.39
8
46
THR
0.41
9
47
TYR
0.42
10
48
LYS
0.47
11
49
THR
0.60
12
50
VAL
0.68
13
51
SER
0.77
14
52
GLY
0.77
15
53
VAL
0.77
16
54
ASN
0.79
17
55
GLY
0.86
18
56
PRO
0.86
19
57
LEU
0.89
20
58
VAL
0.87
21
59
ILE
0.85
22
60
LEU
0.81
23
61
ASP
0.70
24
62
HIS
0.70
25
63
VAL
0.69
26
64
LYS
0.71
27
65
PHE
0.76
28
66
PRO
0.81
29
67
ARG
0.75
30
68
TYR
0.70
31
69
ALA
0.64
32
70
GLU
0.58
3D View
Download PDB file DAQ[Total]
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DAQ Score Table