44843 9BRT g v1-1
44843_9brt_g_v1-1
Sharing Feedback
RCSB PDB: 9BRT
EMDB: 44843
Structure title Intact V-ATPase State 1 and synaptophysin complex in mouse brain isolated synaptic vesicles
Method ELECTRON MICROSCOPY
Resolution 4.3 Å
Source organism Mus musculus
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
6    ​N​​N​​P​​E​​Y​​S​​S​​F​​F​​G​16   ​V​​M​​G​​A​​S​​S​​A​​M​​V​​F​26   ​S​​A​​M​​G​​A​​A​​Y​​G​​T​​A​36   ​K​​S​​G​​T​​G​​I​​A​​A​​M​​S​46   ​V​​M​​R​​P​​E​​L​​I​​M​​K​​S​56   ​I​​I​​P​​V​​V​​M​​A​​G​​I​​I​66   ​A​​I​​Y​​G​​L​​V​​V​​A​​V​​L​76   ​I​​A​​N​​S​​L​​T​​D​​G​​I​​T​86   ​L​​Y​​R​​S​​F​​L​​Q​​L​​G​​A​96   ​G​​L​​S​​V​​G​​L​​S​​G​​L​​A​106  ​A​​G​​F​​A​​I​​G​​I​​V​​G​​D​116  ​A​​G​​V​​R​​G​​T​​A​​Q​​Q​​P​126  ​R​​L​​F​​V​​G​​M​​I​​L​​I​​L​136  ​I​​F​​A​​E​​V​​L​​G​​L​​Y​​G​146  ​L​​I​​V​​A​​L​​I​​L​​S​​T​​K​
colorbar

DAQ Score Table

Score range in the table: -0.30 .. 0.61
-0.30
0.61
#
Residue identifier
Residue name
DAQscore[AA]
1
6
ASN
0.61
2
7
ASN
0.55
3
8
PRO
0.50
4
9
GLU
0.50
5
10
TYR
0.38
6
11
SER
0.37
7
12
SER
0.38
8
13
PHE
0.31
9
14
PHE
0.31
10
15
GLY
0.27
11
16
VAL
0.26
12
17
MET
0.17
13
18
GLY
0.11
14
19
ALA
0.05
15
20
SER
0.01
16
21
SER
-0.04
17
22
ALA
-0.03
18
23
MET
-0.03
19
24
VAL
-0.07
20
25
PHE
-0.10
21
26
SER
-0.10
22
27
ALA
-0.14
23
28
MET
-0.18
24
29
GLY
-0.16
25
30
ALA
-0.11
26
31
ALA
-0.09
27
32
TYR
-0.03
28
33
GLY
-0.01
29
34
THR
-0.10
30
35
ALA
-0.14
31
36
LYS
-0.08
32
37
SER
-0.11
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
6    ​N​​N​​P​​E​​Y​​S​​S​​F​​F​​G​16   ​V​​M​​G​​A​​S​​S​​A​​M​​V​​F​26   ​S​​A​​M​​G​​A​​A​​Y​​G​​T​​A​36   ​K​​S​​G​​T​​G​​I​​A​​A​​M​​S​46   ​V​​M​​R​​P​​E​​L​​I​​M​​K​​S​56   ​I​​I​​P​​V​​V​​M​​A​​G​​I​​I​66   ​A​​I​​Y​​G​​L​​V​​V​​A​​V​​L​76   ​I​​A​​N​​S​​L​​T​​D​​G​​I​​T​86   ​L​​Y​​R​​S​​F​​L​​Q​​L​​G​​A​96   ​G​​L​​S​​V​​G​​L​​S​​G​​L​​A​106  ​A​​G​​F​​A​​I​​G​​I​​V​​G​​D​116  ​A​​G​​V​​R​​G​​T​​A​​Q​​Q​​P​126  ​R​​L​​F​​V​​G​​M​​I​​L​​I​​L​136  ​I​​F​​A​​E​​V​​L​​G​​L​​Y​​G​146  ​L​​I​​V​​A​​L​​I​​L​​S​​T​​K​
colorbar

DAQ Score Table

Score range in the table: -0.48 .. 0.27
-0.48
0.27
#
Residue identifier
Residue name
DAQscore[ATOM]
1
6
ASN
0.27
2
7
ASN
0.26
3
8
PRO
0.26
4
9
GLU
0.25
5
10
TYR
0.08
6
11
SER
0.07
7
12
SER
0.10
8
13
PHE
0.13
9
14
PHE
0.00
10
15
GLY
0.02
11
16
VAL
0.03
12
17
MET
0.00
13
18
GLY
-0.02
14
19
ALA
0.00
15
20
SER
-0.01
16
21
SER
-0.04
17
22
ALA
-0.05
18
23
MET
-0.02
19
24
VAL
-0.01
20
25
PHE
-0.05
21
26
SER
-0.04
22
27
ALA
-0.02
23
28
MET
0.01
24
29
GLY
0.14
25
30
ALA
0.04
26
31
ALA
0.01
27
32
TYR
0.02
28
33
GLY
0.13
29
34
THR
-0.18
30
35
ALA
-0.18
31
36
LYS
-0.13
32
37
SER
-0.11
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.72 .. 0.65
-1.72
0.65
#
Residue identifier
Residue name
DAQscore[SS]
1
6
ASN
0.60
2
7
ASN
0.61
3
8
PRO
0.62
4
9
GLU
0.65
5
10
TYR
0.50
6
11
SER
0.53
7
12
SER
0.53
8
13
PHE
0.53
9
14
PHE
0.47
10
15
GLY
0.47
11
16
VAL
0.50
12
17
MET
0.44
13
18
GLY
0.42
14
19
ALA
0.41
15
20
SER
0.33
16
21
SER
0.24
17
22
ALA
0.21
18
23
MET
0.18
19
24
VAL
0.22
20
25
PHE
0.17
21
26
SER
0.19
22
27
ALA
0.15
23
28
MET
0.07
24
29
GLY
0.07
25
30
ALA
-0.11
26
31
ALA
-0.24
27
32
TYR
-0.30
28
33
GLY
-0.42
29
34
THR
-0.49
30
35
ALA
-0.57
31
36
LYS
-0.59
32
37
SER
-0.59
3D View
Download PDB file DAQ[Total]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -2.50 .. 1.48
-2.50
1.48
#
Residue identifier
Residue name
DAQscore[Total]
1
6
ASN
1.48
2
7
ASN
1.42
3
8
PRO
1.38
4
9
GLU
1.40
5
10
TYR
0.96
6
11
SER
0.97
7
12
SER
1.00
8
13
PHE
0.97
9
14
PHE
0.78
10
15
GLY
0.76
11
16
VAL
0.78
12
17
MET
0.60
13
18
GLY
0.50
14
19
ALA
0.45
15
20
SER
0.33
16
21
SER
0.16
17
22
ALA
0.12
18
23
MET
0.13
19
24
VAL
0.14
20
25
PHE
0.02
21
26
SER
0.05
22
27
ALA
-0.01
23
28
MET
-0.10
24
29
GLY
0.05
25
30
ALA
-0.18
26
31
ALA
-0.32
27
32
TYR
-0.31
28
33
GLY
-0.30
29
34
THR
-0.77
30
35
ALA
-0.89
31
36
LYS
-0.81
32
37
SER
-0.81