4677 6QYD 7T v1-1
4677_6qyd_7T_v1-1
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RCSB PDB: 6QYD
EMDB: 4677
Structure title Cryo-EM structure of the head in mature bacteriophage phi29
Method ELECTRON MICROSCOPY
Resolution 3.2 Å
Source organism Salasvirus phi29
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
4    ​T​​F​​N​​D​​V​​K​​T​​S​​L​​G​14   ​I​​T​​E​​S​​Y​​D​​I​​V​​N​​A​24   ​I​​R​​N​​S​​Q​​G​​D​​N​​F​​K​34   ​S​​Y​​V​​P​​L​​A​​T​​A​​N​​N​44   ​V​​A​​E​​V​​G​​A​​G​​I​​L​​I​54   ​N​​Q​​T​​V​​Q​​N​​D​​F​​I​​T​64   ​S​​L​​V​​D​​R​​I​​G​​L​​V​​V​74   ​I​​R​​Q​​V​​S​​L​​N​​N​​P​​L​84   ​K​​K​​F​​K​​K​​G​​Q​​I​​P​​L​94   ​G​​R​​T​​I​​E​​E​​I​​Y​​T​​D​104  ​I​​T​​K​​E​​K​​Q​​Y​​D​​A​​E​114  ​E​​A​​E​​Q​​K​​V​​F​​E​​R​​E​124  ​M​​P​​N​​V​​K​​T​​L​​F​​H​​E​134  ​R​​N​​R​​Q​​G​​F​​Y​​H​​Q​​T​144  ​I​​Q​​D​​D​​S​​L​​K​​T​​A​​F​154  ​V​​S​​W​​G​​N​​F​​E​​S​​F​​V​164  ​S​​S​​I​​I​​N​​A​​I​​Y​​N​​S​174  ​A​​E​​V​​D​​E​​Y​​E​​Y​​M​​K​184  ​L​​L​​V​​D​​N​​Y​​Y​​S​​K​​G​194  ​L​​F​​T​​T​​V​​K​​I​​D​​E​​P​204  ​T​​S​​S​​T​​G​​A​​L​​T​​E​​F​214  ​V​​K​​K​​M​​R​​A​​T​​A​​R​​K​224  ​L​​T​​L​​P​​Q​​G​​S​​R​​D​​W​234  ​N​​S​​M​​A​​V​​R​​T​​R​​S​​Y​244  ​M​​E​​D​​L​​H​​L​​I​​I​​D​​A​254  ​D​​L​​E​​A​​E​​L​​D​​V​​D​​V​264  ​L​​A​​K​​A​​F​​N​​M​​N​​R​​T​274  ​D​​F​​L​​G​​N​​V​​T​​V​​I​​D​284  ​G​​F​​A​​S​​T​​G​​L​​E​​A​​V​294  ​L​​V​​D​​K​​D​​W​​F​​M​​V​​Y​304  ​D​​N​​L​​H​​K​​M​​E​​T​​V​​R​314  ​N​​P​​R​​G​​L​​Y​​W​​N​​Y​​Y​324  ​Y​​H​​V​​W​​Q​​T​​L​​S​​V​​S​334  ​R​​F​​A​​N​​A​​V​​A​​F​​V​​S​344  ​G​​D​​V​​P​​A​​V​​T​​Q​​V​​I​354  ​V​​S​​P​​N​​I​​A​​A​​V​​K​​Q​364  ​G​​G​​Q​​Q​​Q​​F​​T​​A​​Y​​V​374  ​R​​A​​T​​N​​A​​K​​D​​H​​K​​V​384  ​V​​W​​S​​V​​E​​G​​G​​S​​T​​G​394  ​T​​A​​I​​T​​G​​D​​G​​L​​L​​S​404  ​V​​S​​G​​N​​E​​D​​N​​Q​​L​​T​414  ​V​​K​​A​​T​​V​​D​​I​​G​​T​​E​424  ​D​​K​​P​​K​​L​​V​​V​​G​​E​​A​434  ​V​​V​​S​​I​​R​​P​​N​​N​​A​​S​444  ​G​​G​​A​​Q​​A​
colorbar

DAQ Score Table

Score range in the table: 0.07 .. 1.29
0.07
1.29
#
Residue identifier
Residue name
DAQscore[AA]
1
4
THR
0.81
2
5
PHE
0.84
3
6
ASN
0.86
4
7
ASP
0.83
5
8
VAL
0.83
6
9
LYS
0.80
7
10
THR
0.84
8
11
SER
0.86
9
12
LEU
0.83
10
13
GLY
0.79
11
14
ILE
0.82
12
15
THR
0.80
13
16
GLU
0.76
14
17
SER
0.78
15
18
TYR
0.76
16
19
ASP
0.78
17
20
ILE
0.84
18
21
VAL
0.87
19
22
ASN
0.87
20
23
ALA
0.84
21
24
ILE
0.64
22
25
ARG
0.61
23
26
ASN
0.62
24
27
SER
0.58
25
28
GLN
0.69
26
29
GLY
0.61
27
30
ASP
0.57
28
31
ASN
0.57
29
32
PHE
0.66
30
33
LYS
0.66
31
34
SER
0.58
32
35
TYR
0.64
3D View
Download PDB file DAQ[Cα]
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -0.38 .. 1.13
-0.38
1.13
#
Residue identifier
Residue name
DAQscore[ATOM]
1
4
THR
0.71
2
5
PHE
0.78
3
6
ASN
0.84
4
7
ASP
0.80
5
8
VAL
0.78
6
9
LYS
0.75
7
10
THR
0.79
8
11
SER
0.77
9
12
LEU
0.81
10
13
GLY
0.79
11
14
ILE
0.63
12
15
THR
0.71
13
16
GLU
0.73
14
17
SER
0.77
15
18
TYR
0.80
16
19
ASP
0.77
17
20
ILE
0.72
18
21
VAL
0.69
19
22
ASN
0.71
20
23
ALA
0.76
21
24
ILE
0.59
22
25
ARG
0.51
23
26
ASN
0.53
24
27
SER
0.58
25
28
GLN
0.61
26
29
GLY
0.60
27
30
ASP
0.61
28
31
ASN
0.51
29
32
PHE
0.52
30
33
LYS
0.64
31
34
SER
0.62
32
35
TYR
0.60
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Converting to mmCIF
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -2.39 .. 1.33
-2.39
1.33
#
Residue identifier
Residue name
DAQscore[SS]
1
4
THR
-1.29
2
5
PHE
-1.27
3
6
ASN
-1.31
4
7
ASP
-1.36
5
8
VAL
-1.44
6
9
LYS
-1.54
7
10
THR
-1.57
8
11
SER
-1.43
9
12
LEU
-1.29
10
13
GLY
-1.15
11
14
ILE
-1.08
12
15
THR
-0.90
13
16
GLU
-0.71
14
17
SER
-0.48
15
18
TYR
-0.37
16
19
ASP
-0.32
17
20
ILE
-0.28
18
21
VAL
-0.31
19
22
ASN
-0.40
20
23
ALA
-0.49
21
24
ILE
-0.52
22
25
ARG
-0.50
23
26
ASN
-0.38
24
27
SER
-0.26
25
28
GLN
-0.08
26
29
GLY
0.00
27
30
ASP
-0.02
28
31
ASN
-0.08
29
32
PHE
-0.14
30
33
LYS
-0.22
31
34
SER
-0.29
32
35
TYR
-0.31
3D View
Download PDB file DAQ[Total]
Render Map
SequenceNo structure available
colorbar

DAQ Score Table

Score range in the table: -1.21 .. 3.23
-1.21
3.23
#
Residue identifier
Residue name
DAQscore[Total]
1
4
THR
0.23
2
5
PHE
0.35
3
6
ASN
0.40
4
7
ASP
0.26
5
8
VAL
0.18
6
9
LYS
0.02
7
10
THR
0.06
8
11
SER
0.20
9
12
LEU
0.35
10
13
GLY
0.42
11
14
ILE
0.37
12
15
THR
0.62
13
16
GLU
0.79
14
17
SER
1.07
15
18
TYR
1.18
16
19
ASP
1.23
17
20
ILE
1.28
18
21
VAL
1.25
19
22
ASN
1.18
20
23
ALA
1.11
21
24
ILE
0.70
22
25
ARG
0.63
23
26
ASN
0.77
24
27
SER
0.90
25
28
GLN
1.23
26
29
GLY
1.21
27
30
ASP
1.16
28
31
ASN
1.00
29
32
PHE
1.04
30
33
LYS
1.08
31
34
SER
0.91
32
35
TYR
0.94