4810 6RD9 5 v1-4
4810_6rd9_5_v1-4
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RCSB PDB: 6RD9
EMDB: 4810
Structure title CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 1, composite map
Method ELECTRON MICROSCOPY
Resolution 3.0 Å
Source organism Polytomella sp. Pringsheim 198.80
3D View
Download PDB file DAQ[AA]
Render Map
Sequence of
1    ​M​​K​​L​​L​​P​​E​​S​​L​​Q​​Q​11   ​E​​A​​A​​T​​A​​A​​V​​V​​A​​S​21   ​W​​V​​L​​W​​H​​L​​D​​T​​Q​​L​31   ​L​​P​​T​​I​​M​​R​​E​​H​​K​​L​41   ​H​​A​​C​​W​​A​​A​​A​​A​​K​​R​51   ​Y​​N​​E​​K​​L​​F​​K​​L​​N​​P​61   ​S​​Y​​D​​R​​V​​L​​S​​L​​P​​A​71   ​V​​S​​K​​N​​Q​​V​​L​​E​​N​​V​81   ​F​​H​​T​​A​​P​​K​​A​​P​​V​​E​91   ​H​​L​​E​​K​​M​​V​​S​​A​​N​​S​101  ​K​​V​​Y​​D​​A​​L​​N​​L​​Q​​S​111  ​K​​R​​V​​L​​I​​W​​Q​​V​​K​​P​121  ​A​​L​​F​
colorbar

DAQ Score Table

Score range in the table: 0.47 .. 1.64
0.47
1.64
#
Residue identifier
Residue name
DAQscore[AA]
1
1
MET
1.10
2
2
LYS
1.11
3
3
LEU
1.11
4
4
LEU
1.21
5
5
PRO
1.24
6
6
GLU
1.32
7
7
SER
1.39
8
8
LEU
1.41
9
9
GLN
1.44
10
10
GLN
1.49
11
11
GLU
1.56
12
12
ALA
1.57
13
13
ALA
1.62
14
14
THR
1.64
15
15
ALA
1.63
16
16
ALA
1.61
17
17
VAL
1.60
18
18
VAL
1.47
19
19
ALA
1.35
20
20
SER
1.33
21
21
TRP
1.33
22
22
VAL
1.34
23
23
LEU
1.28
24
24
TRP
1.26
25
25
HIS
1.16
26
26
LEU
1.10
27
27
ASP
0.94
28
28
THR
0.77
29
29
GLN
0.68
30
30
LEU
0.62
31
31
LEU
0.63
32
32
PRO
0.60
3D View
Download PDB file DAQ[Cα]
Render Map
Sequence of
1    ​M​​K​​L​​L​​P​​E​​S​​L​​Q​​Q​11   ​E​​A​​A​​T​​A​​A​​V​​V​​A​​S​21   ​W​​V​​L​​W​​H​​L​​D​​T​​Q​​L​31   ​L​​P​​T​​I​​M​​R​​E​​H​​K​​L​41   ​H​​A​​C​​W​​A​​A​​A​​A​​K​​R​51   ​Y​​N​​E​​K​​L​​F​​K​​L​​N​​P​61   ​S​​Y​​D​​R​​V​​L​​S​​L​​P​​A​71   ​V​​S​​K​​N​​Q​​V​​L​​E​​N​​V​81   ​F​​H​​T​​A​​P​​K​​A​​P​​V​​E​91   ​H​​L​​E​​K​​M​​V​​S​​A​​N​​S​101  ​K​​V​​Y​​D​​A​​L​​N​​L​​Q​​S​111  ​K​​R​​V​​L​​I​​W​​Q​​V​​K​​P​121  ​A​​L​​F​
colorbar

DAQ Score Table

Score range in the table: 0.25 .. 1.16
0.25
1.16
#
Residue identifier
Residue name
DAQscore[ATOM]
1
1
MET
1.16
2
2
LYS
1.04
3
3
LEU
1.09
4
4
LEU
1.05
5
5
PRO
1.10
6
6
GLU
0.99
7
7
SER
0.94
8
8
LEU
0.94
9
9
GLN
0.97
10
10
GLN
1.00
11
11
GLU
1.07
12
12
ALA
1.07
13
13
ALA
1.13
14
14
THR
1.13
15
15
ALA
1.04
16
16
ALA
1.03
17
17
VAL
0.93
18
18
VAL
0.94
19
19
ALA
0.94
20
20
SER
0.91
21
21
TRP
0.96
22
22
VAL
0.95
23
23
LEU
0.90
24
24
TRP
0.90
25
25
HIS
0.84
26
26
LEU
0.76
27
27
ASP
0.78
28
28
THR
0.63
29
29
GLN
0.57
30
30
LEU
0.50
31
31
LEU
0.48
32
32
PRO
0.42
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
Render Map
Sequence of
1    ​M​​K​​L​​L​​P​​E​​S​​L​​Q​​Q​11   ​E​​A​​A​​T​​A​​A​​V​​V​​A​​S​21   ​W​​V​​L​​W​​H​​L​​D​​T​​Q​​L​31   ​L​​P​​T​​I​​M​​R​​E​​H​​K​​L​41   ​H​​A​​C​​W​​A​​A​​A​​A​​K​​R​51   ​Y​​N​​E​​K​​L​​F​​K​​L​​N​​P​61   ​S​​Y​​D​​R​​V​​L​​S​​L​​P​​A​71   ​V​​S​​K​​N​​Q​​V​​L​​E​​N​​V​81   ​F​​H​​T​​A​​P​​K​​A​​P​​V​​E​91   ​H​​L​​E​​K​​M​​V​​S​​A​​N​​S​101  ​K​​V​​Y​​D​​A​​L​​N​​L​​Q​​S​111  ​K​​R​​V​​L​​I​​W​​Q​​V​​K​​P​121  ​A​​L​​F​
colorbar

DAQ Score Table

Score range in the table: -0.69 .. 0.50
-0.69
0.50
#
Residue identifier
Residue name
DAQscore[SS]
1
1
MET
-0.32
2
2
LYS
-0.25
3
3
LEU
-0.18
4
4
LEU
-0.13
5
5
PRO
-0.08
6
6
GLU
-0.04
7
7
SER
0.00
8
8
LEU
0.03
9
9
GLN
0.06
10
10
GLN
0.08
11
11
GLU
0.06
12
12
ALA
0.05
13
13
ALA
0.04
14
14
THR
0.02
15
15
ALA
0.00
16
16
ALA
0.24
17
17
VAL
0.39
18
18
VAL
0.46
19
19
ALA
0.50
20
20
SER
0.47
21
21
TRP
0.44
22
22
VAL
0.43
23
23
LEU
0.43
24
24
TRP
0.43
25
25
HIS
0.42
26
26
LEU
0.41
27
27
ASP
0.38
28
28
THR
0.37
29
29
GLN
0.35
30
30
LEU
0.35
31
31
LEU
0.35
32
32
PRO
0.35
3D View
Download PDB file DAQ[Total]
Render Map
Sequence of
1    ​M​​K​​L​​L​​P​​E​​S​​L​​Q​​Q​11   ​E​​A​​A​​T​​A​​A​​V​​V​​A​​S​21   ​W​​V​​L​​W​​H​​L​​D​​T​​Q​​L​31   ​L​​P​​T​​I​​M​​R​​E​​H​​K​​L​41   ​H​​A​​C​​W​​A​​A​​A​​A​​K​​R​51   ​Y​​N​​E​​K​​L​​F​​K​​L​​N​​P​61   ​S​​Y​​D​​R​​V​​L​​S​​L​​P​​A​71   ​V​​S​​K​​N​​Q​​V​​L​​E​​N​​V​81   ​F​​H​​T​​A​​P​​K​​A​​P​​V​​E​91   ​H​​L​​E​​K​​M​​V​​S​​A​​N​​S​101  ​K​​V​​Y​​D​​A​​L​​N​​L​​Q​​S​111  ​K​​R​​V​​L​​I​​W​​Q​​V​​K​​P​121  ​A​​L​​F​
colorbar

DAQ Score Table

Score range in the table: 0.84 .. 2.92
0.84
2.92
#
Residue identifier
Residue name
DAQscore[Total]
1
1
MET
1.94
2
2
LYS
1.91
3
3
LEU
2.02
4
4
LEU
2.13
5
5
PRO
2.26
6
6
GLU
2.27
7
7
SER
2.33
8
8
LEU
2.38
9
9
GLN
2.47
10
10
GLN
2.58
11
11
GLU
2.69
12
12
ALA
2.69
13
13
ALA
2.78
14
14
THR
2.79
15
15
ALA
2.67
16
16
ALA
2.88
17
17
VAL
2.92
18
18
VAL
2.87
19
19
ALA
2.79
20
20
SER
2.71
21
21
TRP
2.73
22
22
VAL
2.72
23
23
LEU
2.61
24
24
TRP
2.59
25
25
HIS
2.43
26
26
LEU
2.27
27
27
ASP
2.10
28
28
THR
1.77
29
29
GLN
1.61
30
30
LEU
1.47
31
31
LEU
1.46
32
32
PRO
1.37