6676 5WQ8 G v1-3
6676_5wq8_G_v1-3
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RCSB PDB: 5WQ8
EMDB: 6676
Structure title CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae
Method ELECTRON MICROSCOPY
Resolution 3.26 Å
Source organism Vibrio cholerae O1 biovar El Tor str. N16961
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: -0.33 .. 1.48
-0.33
1.48
#
Residue identifier
Residue name
DAQscore[AA]
1
97
GLY
-0.12
2
98
ASP
-0.10
3
99
GLU
-0.15
4
100
VAL
-0.21
5
101
ILE
-0.19
6
102
THR
-0.25
7
103
GLN
-0.22
8
104
VAL
-0.21
9
105
VAL
-0.28
10
106
ALA
-0.24
11
107
VAL
-0.30
12
108
LYS
-0.33
13
109
ASN
-0.31
14
110
VAL
-0.26
15
111
SER
-0.24
16
112
VAL
-0.21
17
113
ARG
-0.19
18
114
GLU
-0.18
19
115
LEU
-0.17
20
116
SER
-0.18
21
117
PRO
-0.16
22
118
LEU
-0.09
23
119
LEU
-0.03
24
120
ARG
-0.03
25
121
GLN
-0.02
26
122
LEU
-0.02
27
123
ILE
-0.01
28
124
ASP
0.09
29
125
ASN
0.10
30
126
ALA
0.07
31
127
GLY
0.06
32
128
ALA
0.05
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: -0.50 .. 1.17
-0.50
1.17
#
Residue identifier
Residue name
DAQscore[ATOM]
1
97
GLY
-0.20
2
98
ASP
-0.24
3
99
GLU
-0.23
4
100
VAL
-0.25
5
101
ILE
-0.27
6
102
THR
-0.29
7
103
GLN
-0.32
8
104
VAL
-0.34
9
105
VAL
-0.35
10
106
ALA
-0.36
11
107
VAL
-0.37
12
108
LYS
-0.39
13
109
ASN
-0.43
14
110
VAL
-0.46
15
111
SER
-0.49
16
112
VAL
-0.48
17
113
ARG
-0.47
18
114
GLU
-0.47
19
115
LEU
-0.45
20
116
SER
-0.42
21
117
PRO
-0.38
22
118
LEU
-0.37
23
119
LEU
-0.35
24
120
ARG
-0.33
25
121
GLN
-0.33
26
122
LEU
-0.33
27
123
ILE
-0.33
28
124
ASP
-0.34
29
125
ASN
-0.35
30
126
ALA
-0.35
31
127
GLY
-0.38
32
128
ALA
-0.37
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -3.11 .. 1.07
-3.11
1.07
#
Residue identifier
Residue name
DAQscore[SS]
1
97
GLY
-0.07
2
98
ASP
-0.06
3
99
GLU
-0.05
4
100
VAL
-0.06
5
101
ILE
-0.06
6
102
THR
-0.07
7
103
GLN
-0.08
8
104
VAL
-0.09
9
105
VAL
-0.09
10
106
ALA
-0.09
11
107
VAL
-0.13
12
108
LYS
-0.14
13
109
ASN
-0.14
14
110
VAL
-0.11
15
111
SER
-0.06
16
112
VAL
-0.08
17
113
ARG
-0.09
18
114
GLU
-0.08
19
115
LEU
-0.06
20
116
SER
-0.06
21
117
PRO
-0.04
22
118
LEU
-0.01
23
119
LEU
0.02
24
120
ARG
0.03
25
121
GLN
0.05
26
122
LEU
0.07
27
123
ILE
0.10
28
124
ASP
0.12
29
125
ASN
0.14
30
126
ALA
0.14
31
127
GLY
0.13
32
128
ALA
0.12
3D View
Download PDB file DAQ[Total]
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DAQ Score Table