8362 5T62 a v1-9
8362_5t62_a_v1-9
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RCSB PDB: 5T62
EMDB: 8362
Structure title Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
Method ELECTRON MICROSCOPY
Resolution 3.1 Å
Source organism Saccharomyces cerevisiae S288C
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: 0.26 .. 1
0.26
1
#
Residue identifier
Residue name
DAQscore[AA]
1
2
GLY
0.78
2
3
ALA
0.76
3
4
TYR
0.79
4
5
LYS
0.77
5
6
TYR
0.75
6
7
LEU
0.79
7
8
GLU
0.76
8
9
GLU
0.77
9
10
LEU
0.83
10
11
GLN
0.72
11
12
ARG
0.93
12
13
LYS
0.94
13
14
LYS
0.95
14
15
GLN
0.81
15
16
SER
0.83
16
17
ASP
0.72
17
18
VAL
0.71
18
19
LEU
0.66
19
20
ARG
0.57
20
21
PHE
0.67
21
22
LEU
0.66
22
23
GLN
0.65
23
24
ARG
0.65
24
25
VAL
0.72
25
26
ARG
0.71
26
27
VAL
0.74
27
28
TRP
0.72
28
29
GLU
0.56
29
30
TYR
0.72
30
31
ARG
0.61
31
32
GLN
0.47
32
33
LYS
0.49
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: 0.20 .. 1.21
0.20
1.21
#
Residue identifier
Residue name
DAQscore[ATOM]
1
2
GLY
0.64
2
3
ALA
0.70
3
4
TYR
0.75
4
5
LYS
0.81
5
6
TYR
0.80
6
7
LEU
0.78
7
8
GLU
0.72
8
9
GLU
0.75
9
10
LEU
0.81
10
11
GLN
0.82
11
12
ARG
1.07
12
13
LYS
1.16
13
14
LYS
1.21
14
15
GLN
1.16
15
16
SER
1.15
16
17
ASP
1.05
17
18
VAL
1.07
18
19
LEU
0.94
19
20
ARG
0.95
20
21
PHE
0.96
21
22
LEU
0.94
22
23
GLN
0.95
23
24
ARG
0.90
24
25
VAL
0.94
25
26
ARG
0.96
26
27
VAL
1.06
27
28
TRP
0.90
28
29
GLU
0.75
29
30
TYR
0.78
30
31
ARG
0.62
31
32
GLN
0.49
32
33
LYS
0.46
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

Score range in the table: -0.95 .. 0.84
-0.95
0.84
#
Residue identifier
Residue name
DAQscore[SS]
1
2
GLY
0.56
2
3
ALA
0.34
3
4
TYR
0.26
4
5
LYS
0.14
5
6
TYR
0.13
6
7
LEU
0.06
7
8
GLU
-0.01
8
9
GLU
0.00
9
10
LEU
0.06
10
11
GLN
0.12
11
12
ARG
0.19
12
13
LYS
0.24
13
14
LYS
0.39
14
15
GLN
0.38
15
16
SER
0.43
16
17
ASP
0.42
17
18
VAL
0.42
18
19
LEU
0.42
19
20
ARG
0.42
20
21
PHE
0.43
21
22
LEU
0.57
22
23
GLN
0.62
23
24
ARG
0.64
24
25
VAL
0.64
25
26
ARG
0.70
26
27
VAL
0.74
27
28
TRP
0.77
28
29
GLU
0.76
29
30
TYR
0.72
30
31
ARG
0.65
31
32
GLN
0.61
32
33
LYS
0.57
3D View
Download PDB file DAQ[Total]
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DAQ Score Table

Score range in the table: 0.17 .. 2.78
0.17
2.78
#
Residue identifier
Residue name
DAQscore[Total]
1
2
GLY
1.97
2
3
ALA
1.80
3
4
TYR
1.79
4
5
LYS
1.72
5
6
TYR
1.68
6
7
LEU
1.63
7
8
GLU
1.46
8
9
GLU
1.53
9
10
LEU
1.70
10
11
GLN
1.66
11
12
ARG
2.19
12
13
LYS
2.33
13
14
LYS
2.55
14
15
GLN
2.35
15
16
SER
2.40
16
17
ASP
2.19
17
18
VAL
2.20
18
19
LEU
2.01
19
20
ARG
1.94
20
21
PHE
2.06
21
22
LEU
2.16
22
23
GLN
2.21
23
24
ARG
2.19
24
25
VAL
2.31
25
26
ARG
2.38
26
27
VAL
2.54
27
28
TRP
2.38
28
29
GLU
2.07
29
30
TYR
2.21
30
31
ARG
1.87
31
32
GLN
1.57
32
33
LYS
1.52