9189 6MPH E v1-1
9189_6mph_E_v1-1
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RCSB PDB: 6MPH
EMDB: 9189
Structure title Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method ELECTRON MICROSCOPY
Resolution 3.8 Å
Source organism Human immunodeficiency virus 1
3D View
Download PDB file DAQ[AA]
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DAQ Score Table

Score range in the table: -0.05 .. 1.37
-0.05
1.37
#
Residue identifier
Residue name
DAQscore[AA]
1
512
ALA
0.04
2
513
VAL
0.06
3
514
GLY
0.14
4
515
ILE
0.13
5
516
GLY
0.16
6
517
ALA
0.12
7
518
VAL
0.17
8
519
PHE
0.17
9
520
LEU
0.16
10
521
GLY
0.13
11
522
PHE
0.24
12
523
LEU
0.25
13
524
GLY
0.36
14
525
ALA
0.42
15
526
ALA
0.32
16
527
GLY
0.30
17
528
SER
0.31
18
529
THR
0.34
19
530
MET
0.41
20
531
GLY
0.41
21
532
ALA
0.50
22
533
ALA
0.45
23
534
SER
0.50
24
535
MET
0.53
25
536
THR
0.61
26
537
LEU
0.58
27
538
THR
0.64
28
539
VAL
0.68
29
540
GLN
0.74
30
541
ALA
0.69
31
542
ARG
0.72
32
543
ASN
0.59
3D View
Download PDB file DAQ[Cα]
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DAQ Score Table

Score range in the table: -0.30 .. 1.31
-0.30
1.31
#
Residue identifier
Residue name
DAQscore[ATOM]
1
512
ALA
-0.30
2
513
VAL
-0.27
3
514
GLY
-0.15
4
515
ILE
-0.23
5
516
GLY
-0.22
6
517
ALA
-0.17
7
518
VAL
-0.22
8
519
PHE
-0.20
9
520
LEU
-0.13
10
521
GLY
-0.09
11
522
PHE
0.08
12
523
LEU
0.05
13
524
GLY
0.14
14
525
ALA
0.20
15
526
ALA
0.10
16
527
GLY
0.12
17
528
SER
0.04
18
529
THR
0.12
19
530
MET
0.19
20
531
GLY
0.33
21
532
ALA
0.37
22
533
ALA
0.25
23
534
SER
0.30
24
535
MET
0.33
25
536
THR
0.32
26
537
LEU
0.34
27
538
THR
0.32
28
539
VAL
0.28
29
540
GLN
0.26
30
541
ALA
0.22
31
542
ARG
0.22
32
543
ASN
0.16
3D View
Download PDB file DAQ[SS]
Download Secondary Structure Prediction file
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DAQ Score Table

3D View
Download PDB file DAQ[Total]
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DAQ Score Table